Gene CHU_2574 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_2574 
SymbolrpoE 
ID4185693 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp2952827 
End bp2953363 
Gene Length537 bp 
Protein Length178 aa 
Translation table11 
GC content39% 
IMG OID638072566 
ProductRNA polymerase, sigma-E factor; heat shock and oxidative stress 
Protein accessionYP_679169 
Protein GI110638960 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACAAG AACTTCAGGT TATTGAAGTT TCTAAAAAAG ATCCTGCTGC TTTTCAACCT 
CTGTACGAAA AATACCACGA GCCAATCTTT CGCTATATCT ATCAGCGCAC CGATGATAAG
GAGGCTGCTT TTGATATTAG CCAGCAGGTA TTTGTTAAAG CATTGATACA TTTGCCGCGT
TATGCGTTTA AAGGCGTACC ATTTTCATCG TGGTTATATC GCATTGCCCG GAATGAAGTA
TACCGGTCAA TTGAAAAGAA TAAGGTGCAG CGTACCTTAA ATATAGATGT AGATGCCCTG
AAAGGATTGC TGCACGAAGC AGACGCAGAT GAAGGCCTGA TTCAAAAAGA AAAAAACTTA
ACAGTATGTT TGGGGCAATT GGCAGAAGCT GATATGCAGT TGATTGAGAT GCGTTTTTTT
GAAAGCCGTG CCTTTAAAGA GATCGGGCAG ATACTTGAGC TGACAGAAAA TAATGCAAAG
GTAAAAGTAT ACCGCATTCT GGAAAAATTA AAGAAATGTA TATTGGCAAC GAGATAA
 
Protein sequence
MEQELQVIEV SKKDPAAFQP LYEKYHEPIF RYIYQRTDDK EAAFDISQQV FVKALIHLPR 
YAFKGVPFSS WLYRIARNEV YRSIEKNKVQ RTLNIDVDAL KGLLHEADAD EGLIQKEKNL
TVCLGQLAEA DMQLIEMRFF ESRAFKEIGQ ILELTENNAK VKVYRILEKL KKCILATR