Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_2574 |
Symbol | rpoE |
ID | 4185693 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 2952827 |
End bp | 2953363 |
Gene Length | 537 bp |
Protein Length | 178 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638072566 |
Product | RNA polymerase, sigma-E factor; heat shock and oxidative stress |
Protein accession | YP_679169 |
Protein GI | 110638960 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACAAG AACTTCAGGT TATTGAAGTT TCTAAAAAAG ATCCTGCTGC TTTTCAACCT CTGTACGAAA AATACCACGA GCCAATCTTT CGCTATATCT ATCAGCGCAC CGATGATAAG GAGGCTGCTT TTGATATTAG CCAGCAGGTA TTTGTTAAAG CATTGATACA TTTGCCGCGT TATGCGTTTA AAGGCGTACC ATTTTCATCG TGGTTATATC GCATTGCCCG GAATGAAGTA TACCGGTCAA TTGAAAAGAA TAAGGTGCAG CGTACCTTAA ATATAGATGT AGATGCCCTG AAAGGATTGC TGCACGAAGC AGACGCAGAT GAAGGCCTGA TTCAAAAAGA AAAAAACTTA ACAGTATGTT TGGGGCAATT GGCAGAAGCT GATATGCAGT TGATTGAGAT GCGTTTTTTT GAAAGCCGTG CCTTTAAAGA GATCGGGCAG ATACTTGAGC TGACAGAAAA TAATGCAAAG GTAAAAGTAT ACCGCATTCT GGAAAAATTA AAGAAATGTA TATTGGCAAC GAGATAA
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Protein sequence | MEQELQVIEV SKKDPAAFQP LYEKYHEPIF RYIYQRTDDK EAAFDISQQV FVKALIHLPR YAFKGVPFSS WLYRIARNEV YRSIEKNKVQ RTLNIDVDAL KGLLHEADAD EGLIQKEKNL TVCLGQLAEA DMQLIEMRFF ESRAFKEIGQ ILELTENNAK VKVYRILEKL KKCILATR
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