| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2557 |
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| Symbol | |
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| ID | 4186625 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 2937640 |
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| End bp | 2939502 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638072549 |
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| Product | putative inner membrane protein translocase component YidC |
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| Protein accession | YP_679152 |
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| Protein GI | 110638943 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0157093 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAAGA ATCAAATTAT CGGTATTTCC TTAATTTCAG TATTGATGTT GGGCTACTTC
GGCTTTATGT CAACACAAAC GCCGGAAACA CCCGTTACTA CACCTCCTGC AATTACACAA
CCTGTTCAAT CAGATACCGT ACTTTTAAAA TCTGCTGCAA CAGATACAGC ACTTAAAGCT
CAAAACCAGC GTGAATACGG TGACTTTGCT GCTGCAATGG TTGGTGAAGC AAAAGAATAT
AAACTGGAAA ACAAAGATGT TGTTGTTACG CTTTCTACAA AAGGCGGTAC AATTAAATCA
GTACTTCTTA AAAATTATTT TACCTGGGAT AAAAAACAAT TGTTCCTATT CAAACAGGAA
AACAATCAGT TATCTCTTAT CCTCAACACA AACAAAAAAC CGGTAGATCT ATACTCGCTG
TACTATGCAG GTGTTGAAAG CAAAGCAGGC GATAAGCAGG TAGTAACGTT CAAAACAGAT
GCAGGCAACG GTAAAACAAT TGAGCACACG TATACCTTAG GTGCAGCAGG TTTTACGGTA
GATTATAATC TGAAAGCAGC CGGTTTTGGC GGAGAGCTTC CAAACCTCCC GTTAACACTT
GACTGGAGGG AGCAGGTTGA ACGTATTGAA TACGATTCAG AACAGGCGCG TGTTAAATCA
ACGGTTAACT ATATGGCTGC CGAAGATGGT TTCGACTATT TATCTGAAGC TTCTAAAGAC
AGAGAAACAG AAACACTTTC CAATGTATAT TGGGTTTCAT TAAAACAAAA ATTCTTTAAC
AGTGGTTTTT ATATTCGTGA AGGCGGTACC ATTCCTTCTG CTACCGTTAC TGCATATCCG
ATGTACAGCA CATTACCCAA TGCGCCTGTT AACTCAGAAA AATTCATCAA AGCACTGGAA
GCTCAGGTAC AATTACCTTT AGAGGCTGTG ATCAGCGGTA AAGCTGCGTA TGCGTTTTAC
TTCGGACCAA ACGATTTCAA AATATGTAAA GCTGTACCGG CTGAAAATTA TCAGAAAAAC
GTAAACCTTG GCTGGCCGCT TGTCAGCTGG ATCAACCGTT TTGTGGTAAT CCCGGTATTT
GATGGTTTAA AAGGCGTGTT CAGCAGTTTC GGTTTAATCA TCGTAATTCT GGTATTGCTT
ATCAAACTTG TATTGCTTCC ATTATCGTAT AAGTCATTTG TTTCAATGGC TAAAATGAAG
GCATTGAAAC CGGAGCTGGA CGAATTAAAA GCAAAGCACG GCGATGATCA GCAAGCAATC
CAGATGGAGC AGATGCAGGT TTACAAGCAA TTCGGTATTA ACCCGTTAAG CGGCTGTATT
CCGGTATTGT TACAAATGCC GATCTTACTT GCTATGTTCA ACTTTTTCCC GAACGCAATC
GACTTACGTG GGGAATCCTT GTGGTGGGCA ACCGATCTTT CCAGCTACGA TGAGTTTGCA
AAACTACCAT TCACCATTCC GTTTTATGGT TCACACGTAA GCATGTTTAC ATTATTGATG
ACCATCTCTA CCCTTGCGTA TACCTGGGTA AACAATCAGG TAAGCACCGT AACAGGACCG
ATGAAATACA TGTCGTATGC CATGCCGGTT GTATTCTTAT TTGTATTAAA CTCCTTCCCT
GCAGGTTTAA GTTTCTACTA TTTTGTTTCA AACTTAGTAA CCATTGCACA GCAATTAATT
ATCCGTCGTT TTGTAGACGA AGGTCAATTA CGTTTGCAGC TGGAAGCAAA AAGGGATAAA
AACTTAAGCG GCGATACAAC AGGCGGCGCT CCTAAAAAGA ACCGTTTCAT GGCACGTATG
GAAGAAGCAA TGAAACAAAG AGAGCAGGAA CAACAGTTTA AGAAAAATAT CAAGAAAAAA
TAA
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| Protein sequence | MDKNQIIGIS LISVLMLGYF GFMSTQTPET PVTTPPAITQ PVQSDTVLLK SAATDTALKA
QNQREYGDFA AAMVGEAKEY KLENKDVVVT LSTKGGTIKS VLLKNYFTWD KKQLFLFKQE
NNQLSLILNT NKKPVDLYSL YYAGVESKAG DKQVVTFKTD AGNGKTIEHT YTLGAAGFTV
DYNLKAAGFG GELPNLPLTL DWREQVERIE YDSEQARVKS TVNYMAAEDG FDYLSEASKD
RETETLSNVY WVSLKQKFFN SGFYIREGGT IPSATVTAYP MYSTLPNAPV NSEKFIKALE
AQVQLPLEAV ISGKAAYAFY FGPNDFKICK AVPAENYQKN VNLGWPLVSW INRFVVIPVF
DGLKGVFSSF GLIIVILVLL IKLVLLPLSY KSFVSMAKMK ALKPELDELK AKHGDDQQAI
QMEQMQVYKQ FGINPLSGCI PVLLQMPILL AMFNFFPNAI DLRGESLWWA TDLSSYDEFA
KLPFTIPFYG SHVSMFTLLM TISTLAYTWV NNQVSTVTGP MKYMSYAMPV VFLFVLNSFP
AGLSFYYFVS NLVTIAQQLI IRRFVDEGQL RLQLEAKRDK NLSGDTTGGA PKKNRFMARM
EEAMKQREQE QQFKKNIKKK
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