| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2491 |
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| Symbol | hrpA |
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| ID | 4184635 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 2860958 |
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| End bp | 2863114 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638072484 |
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| Product | ATP-dependent helicase |
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| Protein accession | YP_679087 |
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| Protein GI | 110638878 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.041451 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAATATA CCATTCCTAC AACCACACTG CCTGTACAGG AAATTGTTCC GCAGGTTATC
AATCACTTTC AAGACAATAC CACCCTTATT GTAAAGGCTC CGCCGGGAGC CGGTAAAAGC
ACCTTGCTTC CACTGACTTT TTTAAATGAG TCGTGGCTGG AAGGTAAAAA AATCATCGTA
CTGGAACCCC GCAGACTTGC AGCAAAAACG ATTGCTACGC GCATGAGCCA GTTGCTGGGC
GAACAGGCAG GAGAAACCGT TGGCTACCGT ATCCGCTTTG AAACAAAGAT CAGCGATAAG
ACGCGTATCG AAGTTGTTAC AGAAGGCATA CTTACACGTA TGCTGCAAAC AGATAATACG
TTAAAAGATG TTGCGTTGGT AATCTTTGAT GAGTTCCACG AACGCAGCAT CCATGCAGAT
GTTGCCCTGG CGCTATGTAG GGAAGCACAG CTGACCAAGC GGAATGACCT GCGCCTGCTG
ATTATGTCTG CAACAATGGA TCTGCCGGAG TTATCTGCCA AACTGAAAGC GAAAATCATT
GAAAGCGAAG GTCGCCAATA CCCCGTCGAA ATTCATTATA CAGGTGTAAC AGACATGCAC
CTGCTGCCCG AGCTAACCGC ACGTGTGGTG AGCAAAGCCA GCAAAGATAA TAAAGGAGAT
ATTCTTGTTT TCCTGCCCGG CCAGGCAGAA ATAAATGCCT GCAGAGATCT GCTTGACAAT
AAACTTAGCA ATACCGTTGT TCATACCCTT TACGGACAAC TTCCTTTTGC ACAGCAGCAG
GCAGCGCTCC TGCCCGATCA GACAGGCAAA CGTAAAGTTG TACTCGCAAC TTCCATTGCA
GAAACAAGTT TAACAATCGA AGGTGTCACA ACGGTTGTTG ATTCGGGTTT TGGCAAGCGT
TCTAAATTTG ATCCGCAATC CGGATTATCC CGTCTTGAAA CAGTGAATAT TTCTGTCGAT
GCTGCTGATC AGCGTGCAGG CCGTGCGGGG CGGTTATCTG CTGGTACCTG TTACCGCATG
TGGTCGAAGG CGCAGCATGA AACCTTACAG AAGCACCACC AGCCGGAAAT AGAAATTACA
GACCTCTCTT CCCTGGTACT TGAAATGGCC GTGTGGGGAA TCTCCAATAT TTATAACATG
GTCTGGCTTA CACCGCCGCC GCAATCACAT GTAAAACAGG CCAAAGAAAC GCTGCATTAC
ATCGATGCAC TCGATCGCAA TAAAGTTACT GCGCATGGAA AAAAGATCCA TCAGCTGCCT
TGCAACCCAC GTATCGCACA CATGCTGCTG ATGGCTGAAA AACTGGAGCA GGAAGCCTTA
GCAACAGATA TTGCGGCAAT CATTGAAGAG AAAGATCCGC TTACAATCAA AGAAGCAGGC
GTTGACATCA ACGAACGGAT CAAAGCGCTG CGCCGCTTCA GAAGAAATGA CGGTAAAGGG
CGTGCCTTTG GATTGATTGA ACGTGTTGCC CGATCATACA GAGACCTCAT GGAAATTGAA
GTAGAAAATG AAGGCTTTGA TTCTTTCATG ACAGGTTTGT TATTGGCACA TGCATATCCG
GAACGTGTTG CATTTGCACG CCCCGGTAAT CAATCACAGT TTCAGCTTGC AAATGGTACC
TATGCGCAGT TCAGCCACAA GGATTCTTTG TCGCGCGAAT CATGGGTATC TGTTTCACAC
ATTGATGCAC GCGAAGGAAC CGGAAAAATT TTTATGGCTT CACCGTTGAA TCCAAAAGAT
CTGAAGGGCA TGGTTAAAAC TGCTGTATCG GTACATTGGG ATCTGATCAG CAATGATCTG
ATCGTACATA CAGAATTACG TATCGGCAAG ATTGTCTTAA AGTCTTTCCC CATGGATGAT
CCAACCGATG AAGAACGTTC AAGAGCCTTA TGTGATGTGG TAAAAAAAGA CGGCAGAGAA
TTATTACATT TTACACCTGA ATTTGAACAG TGGCAAGCAG CTATGTTTAG AGCACAGCAA
CAGCACCCGC TGGCACAGTT TCCCGATGTA GATACAGAAT CGCTCTTGCT TACCTGCGAC
GACTGGCTCA CGCCTTTCGC AGACGAGATC GAAGAAAAAG ATGATCTGAA AAAACTGGAT
CTGCTGCAGA TCATTTCTGC ACGGATTCCG AAAGAGCTGC TGAAGCTTGT TGATTAG
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| Protein sequence | MKYTIPTTTL PVQEIVPQVI NHFQDNTTLI VKAPPGAGKS TLLPLTFLNE SWLEGKKIIV
LEPRRLAAKT IATRMSQLLG EQAGETVGYR IRFETKISDK TRIEVVTEGI LTRMLQTDNT
LKDVALVIFD EFHERSIHAD VALALCREAQ LTKRNDLRLL IMSATMDLPE LSAKLKAKII
ESEGRQYPVE IHYTGVTDMH LLPELTARVV SKASKDNKGD ILVFLPGQAE INACRDLLDN
KLSNTVVHTL YGQLPFAQQQ AALLPDQTGK RKVVLATSIA ETSLTIEGVT TVVDSGFGKR
SKFDPQSGLS RLETVNISVD AADQRAGRAG RLSAGTCYRM WSKAQHETLQ KHHQPEIEIT
DLSSLVLEMA VWGISNIYNM VWLTPPPQSH VKQAKETLHY IDALDRNKVT AHGKKIHQLP
CNPRIAHMLL MAEKLEQEAL ATDIAAIIEE KDPLTIKEAG VDINERIKAL RRFRRNDGKG
RAFGLIERVA RSYRDLMEIE VENEGFDSFM TGLLLAHAYP ERVAFARPGN QSQFQLANGT
YAQFSHKDSL SRESWVSVSH IDAREGTGKI FMASPLNPKD LKGMVKTAVS VHWDLISNDL
IVHTELRIGK IVLKSFPMDD PTDEERSRAL CDVVKKDGRE LLHFTPEFEQ WQAAMFRAQQ
QHPLAQFPDV DTESLLLTCD DWLTPFADEI EEKDDLKKLD LLQIISARIP KELLKLVD
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