Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_2467 |
Symbol | sppA |
ID | 4184416 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 2835155 |
End bp | 2836906 |
Gene Length | 1752 bp |
Protein Length | 583 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638072460 |
Product | protease IV; signal peptide peptidase |
Protein accession | YP_679063 |
Protein GI | 110638854 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.023523 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTTTA TAAAACAAGT TCTGGCTGTT TTTGTTGCGT TTGTATTGTT TGTTGTGCTG GGCATTCTCA TTATCGTAGC ATTGTTCTCA TCCGGTAAAG AAGATGTTTC TGCAGCCGTA AAAGAAAATT CTGTATTAAG GCTTACGCTG GATAACGAAA TTATTGAACG TGAATCAGAT AAACTATTCG ATGGGTTGCT GGATCCGAGA GGTGCTGCTT CAAAGATCGG CCTGCTTGAA TTAAGAGAAG CCATACAGGA AGCCGCTGTA AATGATAAGA TCAAAGGTAT TGTTATTGAG ATTAAATTTG CGAATACCGG TATTGCTACC TGGAAAGAAT TAAGAGATGA ATTGACTGCA TTTAAAAAAT CTGGGAAATT TATTATTGCT TATGGTGAAA TGTACACCGA AGCAGGATAC TATCTGGCAT CTGTGGCAGA TGAAATATAT TTGCCTGAAT CAGGTATGCT TGAGTTTAAT GGCATTGGTG TAAACATGCT TTATTTTAAA AACCTGTTGA GTAAAATAGG GGTTAAGACA GAAGTGTTCC GTGTAGGTAA ATATAAAAGT GCAATTGAAC CGCTTGTTAA CGATCACATG AGTGACGAAG ACAGAGAACA GGTACACTTA TATATAAACT CATTGTATTC AGTCATGCTG AATGATATTG CGTCGTCCAG AAATATTCCG TTAGCGTCAT TAAAAAATAT TTCAGATTCA ATGCTGGTAC GCAATGCGCA TGATGCAAAG AAATATGGCC TGGTTACAAA CGTAGCTTAT TACGATGAGA TGTTATCTTC TCTGAAGAAA AAACTAACTG TTGAACCGGA TCAGGAAATT GATTTTGTTT CATACAAAAA AATAATAAAA GGCAAACCTG AAAAAACAAC CTCAAGTGAA CCGCATATCG CTGTTTTATT TGCCAACGGA GAAATTCAAT CGGGCAAAGG TGATAATGAA ACAATCGGGT CAGAGACATT TTGTACAGAT TTACGTAGGC TGCGCGAAGA TAAAAATGTT AAGGCAATTG TATTACGTGT GAACTCACCG GGTGGCAGTG CACTGGCATC GGATCTTATC TGGAGAGAAA TTATGCTGGC ACGTGAAGTG AAACCCGTGA TTGCCTCTAT GGGTAATGTA GCTGCATCAG GAGGCTATTA CATTGCTATG GCCTGTGATA CAATCGTGGC TTCACCGGCA ACAATAACCG GTTCCATTGG CGTATTCGGT TTATTGATGA ATACAGAAGA TTTGCTGAAC AACAAGCTGG GCATTTCTAC CGATCGTGAA AAGACCGGTT TATATTCCGA CCTTGGTTCG CTTACACGCC CGGTAACAGA CGCGGAACGT ATGATTATTC AGAATGAAGT AAATGCCATT TATGCTACGT TTATCAGAAA AGCGGCAGAG GGAAGACACA CTTCTGTTGA AACGATAGAA GTACACGCAT CCGGTCGTGT ATGGGCAGGG AAAGATGCCA AAGAAAACAA CCTGATTGAT GTATTCGGAG GCATGAATGA TGCTGTTATG CTGGCTGCTA AAGCAGCAAA TATGGGAGAA AAATATGCGT TGGTGTATTA TCCGGAACAA AAAAATCAGG CTTTGATTGC TCTGATGAAT GCTTTTTCAG ACGATGAAGA AGCAAAAATA AAAACCTTCG GCGCATACTA TACACATTTC AAAACGCTAC AGTCTTTACC TAAATATCAA GGCGTACAGG CCCGGATTCC TTATTTTATG GAAATAAAAT AA
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Protein sequence | MSFIKQVLAV FVAFVLFVVL GILIIVALFS SGKEDVSAAV KENSVLRLTL DNEIIERESD KLFDGLLDPR GAASKIGLLE LREAIQEAAV NDKIKGIVIE IKFANTGIAT WKELRDELTA FKKSGKFIIA YGEMYTEAGY YLASVADEIY LPESGMLEFN GIGVNMLYFK NLLSKIGVKT EVFRVGKYKS AIEPLVNDHM SDEDREQVHL YINSLYSVML NDIASSRNIP LASLKNISDS MLVRNAHDAK KYGLVTNVAY YDEMLSSLKK KLTVEPDQEI DFVSYKKIIK GKPEKTTSSE PHIAVLFANG EIQSGKGDNE TIGSETFCTD LRRLREDKNV KAIVLRVNSP GGSALASDLI WREIMLAREV KPVIASMGNV AASGGYYIAM ACDTIVASPA TITGSIGVFG LLMNTEDLLN NKLGISTDRE KTGLYSDLGS LTRPVTDAER MIIQNEVNAI YATFIRKAAE GRHTSVETIE VHASGRVWAG KDAKENNLID VFGGMNDAVM LAAKAANMGE KYALVYYPEQ KNQALIALMN AFSDDEEAKI KTFGAYYTHF KTLQSLPKYQ GVQARIPYFM EIK
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