| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2338 |
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| Symbol | |
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| ID | 4185128 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 2699535 |
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| End bp | 2701799 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638072335 |
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| Product | S1 RNA-binding domain-containing protein |
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| Protein accession | YP_678938 |
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| Protein GI | 110638729 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.156081 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAAAG TGGAGATTTC TGTACTGCAT GTACATGTAG TGGCAGCTGA ATTAAGTGTC
AGCACCAAAC AAGTAGAAGC AACGATCGAA TTATTGGATG AAGGTGCAAC CGTACCGTTC
ATTTCCCGCT ACCGGAAAGA GATCACCGGC AGCATGGATG AAGTACAGAT TGCCGCCATC
CGCGATCGCT TTGAACAGCT GCGTGAACTG GATAAACGCA GAGAAAGTAT TTTGAAATCC
ATTCAGGAAC AAGGAAAGCT TACACCTGAA TTAGAAGAAA AAATTAAAGT AGCCGGTACC
ATGACTGAGC TGGAAGATTT ATACCTTCCA TACAAACAGA AAAGAAAAAC CCGTGCAAGC
ATTGCCAAAG AAAAAGGTCT GGAGCCGTTA GCTACCCTTA TTCTGGAACA GGCAAATACA
GACCTGGATG GGGAAGCAGC GAAATTTATA GATACTGAAA AGGGTGTGAA CACGCTCGAA
GAAGCATTGG CTGGGGCACG GGATATCATT GCAGAACTGA TCAATGAAGA CCAGCAGGCG
CGTGCTTCGG TACGTCAGCT GTTCAACGAA AAAGGAACGA TCAAATCCCG CGTGTTTCCG
GGTAAAGAAA ACGAAGGACA GAAATACCGC GATTACTTTG AGTGGGAAGA GCCGATTGCG
AAAACGCCTT CGCACCGCCT GCTTGCCATG CGCAGAGGCG AGAAGGAAGG CTTCCTGATG
CTTGACATCG CACCGGTAGA AGAGGATGCG ATAGAGATCC TGGATCGTCA GTTTGTACAG
GGCAGAGGAG TTTGCGCCGA TCAGGTGAAG CTTGCTGCCA AAGATGCCTA CAAGCGGTTG
CTGAAACCAT CCATGGAAAC GGAAGTGCGC ATGGGTACCA AGAACAAAGC CGATGAAGAA
GCGATTCGTG TTTTCTCCGA CAACTTAAAA CAGCTGTTGC TTTCTTCTCC GCTGGGACAG
AAAAATGTTC TGGCCTTAGA TCCAGGCTTC CGTTCAGGGT GCAAGGTTGT GTGCTTAGAC
AGGCAAGGTA AATTACTGGA AGAAACGGTT GTGTATCCGC ACGAGCCGCA ACGCCAGACA
CACCAGTCTG CAGCCGTGAT TATGGCGCTG TGTCAGAAAC ATGCCATTGA AGCCATCTCT
ATCGGTAACG GTACAGCAGG GCGCGAAACC GAAGCTTTTG TAAAGGGGTT GGGTTTGCCG
AACGAAATAT TAATTGTAAT GGTGAACGAA AGCGGTGCCT CGGTGTATTC CGCATCCGAC
GTGGCACGCG AAGAGTTTCC GGAATACGAT GTTACGGTAA GAGGCGCGGT TTCTATCGGC
CGCCGTTTGA TGGACCCATT GGCAGAGCTT GTAAAGATTG ATCCGAAAGC CATTGGTGTT
GGTCAATACC AGCACGATGT AGATCAGACA GCTTTAAAGA AAAGCCTGGA TGAAGTGGTA
ATCAGTTCGG TGAACTTAGT AGGTGTGGAA GTAAACACCG CAAGTAAGCA GCTGTTGACG
TACGTTTCAG GCCTTGGTCC GCAGCTGGCA CAAAACATTA TTGATTACAG AAATACAAAC
GGCCCGTTTA AATCACGTGC AGATATTAAA AAAGTAGCAC GTATGGGCGA CAAAGCGTTT
GAACAGTCGG CAGGTTTCTT ACGCGTACGT GATGCAGAAA ATCCACTGGA CAGAAGTGCG
GTGCACCCGG AAAGCTATCC GGTAGTAGAG CGTATGGCCA AAGATTTAGG TGCTTCTGTA
ACCGATATCA TGAAGAGCAA AGAGCTGCGT CAGAAAATTG TATTAAAGAA TTACGTAAGC
GAAACCGTTG GTTTACCGAC GCTTCAGGAT ATCTTCCAGG AACTGGATAA ACCGGGCCGT
GATCCGCGCC AGACCTTTGA AGTGTTTGAA TTCGCCGAAG GAGTGAAGGA AATGAAAGAC
CTGCGTCCGG GTATGAAACT GCCGGGCATC ATCACCAATG TCACCAAGTT TGGTGTGTTT
GTAGATATAG GCGTACACCA GGATGGTTTG ATCCACATCA GTCACCTGAG CGACCGTTTT
ATCTCTGACC CCTCAGAAGT AGTTAAAGTA CAGCAGAAAG TACAGGTAAC GGTACTTGAA
GTAGATGAAG CACGCAAGCG GATCAGCTTA TCCATGAAAG GGGATGCGGG CGGAGCTGTC
CGCCACGGCG GATCAAAAGG TGCAGGCGGC GCGAAGAAAG AAAAAGAAGT AGAAGGCGAC
ATGCAATCGA AACTGAATAT GCTGATGTCG AAATTCAAGA ATTAA
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| Protein sequence | MSKVEISVLH VHVVAAELSV STKQVEATIE LLDEGATVPF ISRYRKEITG SMDEVQIAAI
RDRFEQLREL DKRRESILKS IQEQGKLTPE LEEKIKVAGT MTELEDLYLP YKQKRKTRAS
IAKEKGLEPL ATLILEQANT DLDGEAAKFI DTEKGVNTLE EALAGARDII AELINEDQQA
RASVRQLFNE KGTIKSRVFP GKENEGQKYR DYFEWEEPIA KTPSHRLLAM RRGEKEGFLM
LDIAPVEEDA IEILDRQFVQ GRGVCADQVK LAAKDAYKRL LKPSMETEVR MGTKNKADEE
AIRVFSDNLK QLLLSSPLGQ KNVLALDPGF RSGCKVVCLD RQGKLLEETV VYPHEPQRQT
HQSAAVIMAL CQKHAIEAIS IGNGTAGRET EAFVKGLGLP NEILIVMVNE SGASVYSASD
VAREEFPEYD VTVRGAVSIG RRLMDPLAEL VKIDPKAIGV GQYQHDVDQT ALKKSLDEVV
ISSVNLVGVE VNTASKQLLT YVSGLGPQLA QNIIDYRNTN GPFKSRADIK KVARMGDKAF
EQSAGFLRVR DAENPLDRSA VHPESYPVVE RMAKDLGASV TDIMKSKELR QKIVLKNYVS
ETVGLPTLQD IFQELDKPGR DPRQTFEVFE FAEGVKEMKD LRPGMKLPGI ITNVTKFGVF
VDIGVHQDGL IHISHLSDRF ISDPSEVVKV QQKVQVTVLE VDEARKRISL SMKGDAGGAV
RHGGSKGAGG AKKEKEVEGD MQSKLNMLMS KFKN
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