| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2221 |
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| Symbol | rlpA |
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| ID | 4185781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 2582161 |
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| End bp | 2582910 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638072222 |
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| Product | rare lipoprotein A-like protein |
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| Protein accession | YP_678826 |
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| Protein GI | 110638617 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0797] Lipoproteins |
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| TIGRFAM ID | [TIGR00413] rare lipoprotein A |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.219986 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAGCGCA TTAGAATCTT TGTTTCATTA GTAAAAAACC TAATTATCAA AAACATACAT
TCAAAATTTG GATTTATCTT TGTCCTTCTT TTTTGCCTGA ACTACACCCT TTTTTCAAAA
TCAGAACCAA CCACAGGAAG TGCCAGTTAC TATGCGAATA AATTTCAAGG CAAAAGAACT
GCTTCAGGAG AAACCTACGA TAAAAACAAA TTTACCGCAG CACACAGGAC ATATGCGTTC
GGAACAAAAT TAAAAGTCAC CAATATTAAA ACAGGGATTT GGATCCAAGT ATATGTAAAT
GACCGCGGTC CGTATGCAAA AGACCGGATC ATTGATGTAT CTTATGCAGC GGCTACAGCG
CTTGGTATGA TCCAGCCCGG AACCATTCAG GTAAAACTAG AGATCTTAAG CGATGGCGAT
GTGATTGAAA TACCGCCGCC GGTTGTTCAT AATCAAAAAC CAAATTCGCT TTCTCCAGGC
TTCTATTCTA CTAAATTGGA GCCTATTCAG CGACCCAAAG GATATCTTCT GCAAATAGGC
GCGTTCAGTT CATATGAGCA CGCTTCTAGG CGTATCGGCG AATTAGATGA CTATACCATC
GGAGCACCCT GTATTGAGCT TATAACGGTC AAAAAAAAGA AATTATACCG GGTAATCTAC
TCTGGTTTTG CGACCAAACA AAAAGTTACT CAGAAACAAA AAGAATTAAA GAAAAAAGGA
TTTGATAGTG TGATCCTATC TCCAAAATAA
|
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| Protein sequence | MQRIRIFVSL VKNLIIKNIH SKFGFIFVLL FCLNYTLFSK SEPTTGSASY YANKFQGKRT
ASGETYDKNK FTAAHRTYAF GTKLKVTNIK TGIWIQVYVN DRGPYAKDRI IDVSYAAATA
LGMIQPGTIQ VKLEILSDGD VIEIPPPVVH NQKPNSLSPG FYSTKLEPIQ RPKGYLLQIG
AFSSYEHASR RIGELDDYTI GAPCIELITV KKKKLYRVIY SGFATKQKVT QKQKELKKKG
FDSVILSPK
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