Gene CHU_2179 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_2179 
SymbolrsbU 
ID4183928 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp2533631 
End bp2534845 
Gene Length1215 bp 
Protein Length404 aa 
Translation table11 
GC content37% 
IMG OID638072180 
Productsigma factor regulation protein 
Protein accessionYP_678784 
Protein GI110638575 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.116997 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.843172 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTAGAGA AGTCAACAAC TACGCAGACA CACGAATTAC TTGTAAAAGA TTTAAAGTTA 
TCGTCTTTGC TTGAGATTAC GCAGGCAATC AATGCGAATT TGCCTGAATC GTCTTTATAT
AAAATTTTTC AGTTTACCTT ATTAGCAAAT TTAAGTGTCG GCAAACTGGC GTTATATGTT
AAAGATGATG CCTGGGTTTG TAAAGCAAAT GTTGGTACCG CGCTTGATTA CACGAACGTT
CCTTTATCTG AAGAACTTCA ACACATTACA GCCATTACAG TACTTGACCT TGCTGTATCT
GAACCGTTTT CTGATTTTGA TCTGGTAATT CCGGTTATTC ATAAAAACAA TGTGCTCGCA
TATGTGTTTT TAAAGAAAAA AGCAGATAAG GGAGAGATCG ATCAGGCCTT TATTCAAACG
TTTACAAACA TTATTCTTGT AGCAATTGAG AATAAAAAGT TTGCACGAAG GGAATTACAG
CAGGAAGCAT TTAAAAAAGA GATGCAGATT GCGCGCGAAG TACAAAGTCA TCTGTTCCCG
AAAGATTTAC CTGAAACAAG TAAAATTTCC TTAAAAGCAT TTTATTTACC GCATCAGACC
ATTGGCGGTG ATTATTACGA TTACATCGAT ATAGATGAAG ACCGCTCGCT GGTATGTATT
GCAGATGTAA GTGGTAAAGG CGTTCCTGCC GCTATTCTCA TGTCCAATGT ACAGGCGGCG
TTGCGCACGA TGTTGCGTTA TACAAGTGAT CTTAAAAAGA TTGTTTTTCA ATTGAATGAA
TTAATTCTGC TGCATACAAA AGGCAATCGG TTTGTAACCA TGTTTATTTG TATTCTTGAT
TTTACTAAAA AAGAAATAGC GTATATCAAT GCCGGTCATA ACTCGATTCC GTTGATTCAG
AAAGATCAGG TAATCTTGCT GGATAAGGGC TGTACAATTC TTGGTATGTT TGACCGCTTA
CCTTTGATTG AAGAAACGAT ATTAAAACTA CAGGATGAAA ATCATTTGTT TTTGTATACG
GATGGTTTAT CTGAATGTAT GAATGAAAAA GATGATGAAT TTGGTTTAGA GCGTATTCTG
CCTATGATTC AGATTGAAGC CTCAAAAAAT CAGACCGAGA TGATTGAATC CATTGTAAAA
GCAACGGTAG ATTTTAAAGG TACAAAAGCC TACAACGATG ATATAACAGT CCTGAGCTGC
CGTATTCAGG CGTAA
 
Protein sequence
MVEKSTTTQT HELLVKDLKL SSLLEITQAI NANLPESSLY KIFQFTLLAN LSVGKLALYV 
KDDAWVCKAN VGTALDYTNV PLSEELQHIT AITVLDLAVS EPFSDFDLVI PVIHKNNVLA
YVFLKKKADK GEIDQAFIQT FTNIILVAIE NKKFARRELQ QEAFKKEMQI AREVQSHLFP
KDLPETSKIS LKAFYLPHQT IGGDYYDYID IDEDRSLVCI ADVSGKGVPA AILMSNVQAA
LRTMLRYTSD LKKIVFQLNE LILLHTKGNR FVTMFICILD FTKKEIAYIN AGHNSIPLIQ
KDQVILLDKG CTILGMFDRL PLIEETILKL QDENHLFLYT DGLSECMNEK DDEFGLERIL
PMIQIEASKN QTEMIESIVK ATVDFKGTKA YNDDITVLSC RIQA