| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2179 |
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| Symbol | rsbU |
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| ID | 4183928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 2533631 |
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| End bp | 2534845 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 638072180 |
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| Product | sigma factor regulation protein |
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| Protein accession | YP_678784 |
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| Protein GI | 110638575 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.116997 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.843172 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGTAGAGA AGTCAACAAC TACGCAGACA CACGAATTAC TTGTAAAAGA TTTAAAGTTA
TCGTCTTTGC TTGAGATTAC GCAGGCAATC AATGCGAATT TGCCTGAATC GTCTTTATAT
AAAATTTTTC AGTTTACCTT ATTAGCAAAT TTAAGTGTCG GCAAACTGGC GTTATATGTT
AAAGATGATG CCTGGGTTTG TAAAGCAAAT GTTGGTACCG CGCTTGATTA CACGAACGTT
CCTTTATCTG AAGAACTTCA ACACATTACA GCCATTACAG TACTTGACCT TGCTGTATCT
GAACCGTTTT CTGATTTTGA TCTGGTAATT CCGGTTATTC ATAAAAACAA TGTGCTCGCA
TATGTGTTTT TAAAGAAAAA AGCAGATAAG GGAGAGATCG ATCAGGCCTT TATTCAAACG
TTTACAAACA TTATTCTTGT AGCAATTGAG AATAAAAAGT TTGCACGAAG GGAATTACAG
CAGGAAGCAT TTAAAAAAGA GATGCAGATT GCGCGCGAAG TACAAAGTCA TCTGTTCCCG
AAAGATTTAC CTGAAACAAG TAAAATTTCC TTAAAAGCAT TTTATTTACC GCATCAGACC
ATTGGCGGTG ATTATTACGA TTACATCGAT ATAGATGAAG ACCGCTCGCT GGTATGTATT
GCAGATGTAA GTGGTAAAGG CGTTCCTGCC GCTATTCTCA TGTCCAATGT ACAGGCGGCG
TTGCGCACGA TGTTGCGTTA TACAAGTGAT CTTAAAAAGA TTGTTTTTCA ATTGAATGAA
TTAATTCTGC TGCATACAAA AGGCAATCGG TTTGTAACCA TGTTTATTTG TATTCTTGAT
TTTACTAAAA AAGAAATAGC GTATATCAAT GCCGGTCATA ACTCGATTCC GTTGATTCAG
AAAGATCAGG TAATCTTGCT GGATAAGGGC TGTACAATTC TTGGTATGTT TGACCGCTTA
CCTTTGATTG AAGAAACGAT ATTAAAACTA CAGGATGAAA ATCATTTGTT TTTGTATACG
GATGGTTTAT CTGAATGTAT GAATGAAAAA GATGATGAAT TTGGTTTAGA GCGTATTCTG
CCTATGATTC AGATTGAAGC CTCAAAAAAT CAGACCGAGA TGATTGAATC CATTGTAAAA
GCAACGGTAG ATTTTAAAGG TACAAAAGCC TACAACGATG ATATAACAGT CCTGAGCTGC
CGTATTCAGG CGTAA
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| Protein sequence | MVEKSTTTQT HELLVKDLKL SSLLEITQAI NANLPESSLY KIFQFTLLAN LSVGKLALYV
KDDAWVCKAN VGTALDYTNV PLSEELQHIT AITVLDLAVS EPFSDFDLVI PVIHKNNVLA
YVFLKKKADK GEIDQAFIQT FTNIILVAIE NKKFARRELQ QEAFKKEMQI AREVQSHLFP
KDLPETSKIS LKAFYLPHQT IGGDYYDYID IDEDRSLVCI ADVSGKGVPA AILMSNVQAA
LRTMLRYTSD LKKIVFQLNE LILLHTKGNR FVTMFICILD FTKKEIAYIN AGHNSIPLIQ
KDQVILLDKG CTILGMFDRL PLIEETILKL QDENHLFLYT DGLSECMNEK DDEFGLERIL
PMIQIEASKN QTEMIESIVK ATVDFKGTKA YNDDITVLSC RIQA
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