| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2140 |
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| Symbol | tfdD |
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| ID | 4187064 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 2486267 |
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| End bp | 2487373 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638072140 |
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| Product | mandelate racemase/muconate lactonizing family protein |
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| Protein accession | YP_678745 |
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| Protein GI | 110638536 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.218798 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATTATAA CACAGGTTGA ACTATACAAA TCTCCCGTTA AACTAAAAGA GCCGTTCAAA
ATCTCATTGG GTATTCTGAC CCATGCGAAC AATGTTATTG TCCGTATCCA TACTGCCAGC
GGACATATCG GATATGGAGA ATGCAGTCCG TTTATGACCA TTCACGGGGA AAGTATGGAT
ACCGCTTTTA TCGTCGGTCA GTATTTGGCG AAAGGATTGA TTGGTACATC CTGTCTTGAT
ATTGTGAGCA ACAGCCTGTT AATGGATGCA ATTATCTATG GAAACAGCTG TATTAAAAGC
GCGTTTAATA TTGCCTTGTA TGATCTTGCT GCTCAGCATG CCGGGCTGCC TTTATATGCT
TTTTTAGGCG GCAAAAAAGA TAAGATTATA CAAACAGATT ATACAGTAAG CATTGACGAG
CCGCATAAAA TGGCTGCTGA CGCTGTTCAG ATTAAGAAAA ACGGATTTGA AATAATCAAA
GTGAAAGTAG GCGGAAGCAA AGAGCTGGAT GTGGAACGCA TCCGCATGAT CCGTGAGGCT
GCAGGTGATT CCATTACGTT GCGTATTGAC GCCAATCAGG GATGGTCTGT AGAAACAGCC
ATTGAAACAT TAACACTGCT GGAACCCTAT AACATACAGC ATTGTGAAGA ACCTGTCTCG
CGGAATTTGT ATACAGCGTT GCCAAAAATA CGGCAGGCAT GCCGCATACC GATTATGGCA
GACGAATCCT GCTGCAATTC GTTCGATGCG GAACGCCTCA TACAGATACA GGCCTGTGAT
TCGTTTAATC TTAAGCTGAG TAAATCGGCA GGTATCACCA ATGCCTTAAA TATAATAAGG
CTTGCAGAGC AGGCGCATAT GCCTGTTCAG GTGGGTGGTT TTCTGGAATC AAGACTGGGA
TTTACCGCCG CTGCGCACGT AGCATTGGTG AGTAAAACAA TCTGTTATTA TGATTTTGAT
ACACCGCTTA TGTTTGAAGC GGATCCGGTA CGGGGAGGAA TTGTTTATCA GCAGAGAGGT
ATCATTGAAG TGCCCGAAAC AGCAGGGCTG GGCGCCGGTT ACCAGAAGGA TTACCTGTCG
GGCCTGGAAA AAATATGCAT AAACTGA
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| Protein sequence | MIITQVELYK SPVKLKEPFK ISLGILTHAN NVIVRIHTAS GHIGYGECSP FMTIHGESMD
TAFIVGQYLA KGLIGTSCLD IVSNSLLMDA IIYGNSCIKS AFNIALYDLA AQHAGLPLYA
FLGGKKDKII QTDYTVSIDE PHKMAADAVQ IKKNGFEIIK VKVGGSKELD VERIRMIREA
AGDSITLRID ANQGWSVETA IETLTLLEPY NIQHCEEPVS RNLYTALPKI RQACRIPIMA
DESCCNSFDA ERLIQIQACD SFNLKLSKSA GITNALNIIR LAEQAHMPVQ VGGFLESRLG
FTAAAHVALV SKTICYYDFD TPLMFEADPV RGGIVYQQRG IIEVPETAGL GAGYQKDYLS
GLEKICIN
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