| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2084 |
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| Symbol | rcsC |
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| ID | 4183463 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 2432507 |
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| End bp | 2434489 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638072083 |
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| Product | sensor for ctr capsule biosynthesis; sensor histidine kinase |
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| Protein accession | YP_678688 |
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| Protein GI | 110638480 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAGAAC GTATACGCTC TTTTGATTGG GCTGCAACGT CTCTTGGCCC GATCAGCACC
TGGCCGCAAA GTTTGTTAAC ATCTGTTAGC ATTATGCTGC ATTCAACGTT TCCCATGTTT
ATCTGGTGGG GAGAAGAGAT GATTCAGTTT TATAATGATG CGTACCGGCC GAGTTTAGGA
AACGAGGGGA AACACCCGTC AGCGCTGGGT CAAAAAGGGG GGGATTGCTG GCAGGAAATC
TGGCCGGTAA TAAAGCCCAT GATTGATGAG GTTATACAGG GGAAATCGAC CTGGAATGAA
AACCAGCTGA TTCCGATTTA CCGGAATGGT AAACTGGAAG ATGTATACTG GACATTCGGT
TACAGTCCGA TTTACAAAGA GGGAGGCACT GTTGGCGGTG TGCTTGTTGT ATGTACCGAA
ACAACAGATG CGGTAGTGAA TCTGAAAAAA ATTGAAGAGG ATGAAAATAA GTTACGGTTC
TCTATTGAAG CAGCAGAATT AGCTACCTGG GATTACGACC CTGCAACCAA TAAATTTCAG
GGAAATAATC TTCTGAAAGA ATGGTTTGGC TTAGTGCCGC TGGAAGAAAT TGATCTTTCC
CTGGCACTCG CTGTAATAAC AGATACCGAC AGGCCTTTAG TTGTAAAGGC GATTGAGGCT
GCGCTGGAAC ATACGTCCGG CGGTAATTAT AACGTTGAGT ATACCATTGT ACATCCCGTT
TCCAAGAAGG CACGCATTGT AAAAGCCAAA GGCAGAGCCT GGTTCAATGA AAAAAAGATT
GCATACCGGT TTAACGGTAT TCTGCAGGAT GTAACAGAAG AAGTTTCTTC AAGAATGGCC
TATGAAGAAT CGCAGGATCA GATCCGTTTC GCTTCAGACC GTTTGCAGCT GGCTCTGGAC
GCAGGGGAGA TCGGTTATTA TGAGTGGGCG ATCGAAAACG ATGAAATGCA TTGCAATAGT
CTGTACAAGA AAATTTTCGG ATTTTCAGAT GCACATGATC CTACCTATAA AGAATTTACT
TCCCAGATCT TTCCTAAAGA CCTGAGTGTA CGTAATAATG CTGTACAGCG GGCTATTCTG
GTGGGTGGTG TTTATAATGC CGAATACCGG GTACGTCACC CAAATGATGA ACTGCGCTGG
GTGAAATCAT TTGGTAAAGC CATATATGAT GAGAAAGGCA AACCTGTAAA ACTTATCGGG
ATGATCCTGG ATATTACCGA ACACAAACAG TTTGCAGAAG AGCTGAGCAG GCAGGTGCGG
GAACGTACTG CAGAACTGAA GCAAACCAAT TCAGATCTGC TGCAATTTGC GCATGTTGCC
AGTCATGACC TGAAAGAGCC GGTGCGGAAG GTAAAAATTT TCAGTGGACG CATACGTGAT
GAGTTTAAAA AAGAACTGCC TGTAAAAGGG CATATCTACC TCGAAAAAAT ACAGCATTCA
ACAGACCGTA TGCTTTCTAT GATTGAAGGG GTGCTGATGT ATTCCACGCT AAGTAATCTT
ACTCAGGTAA TGGAGAAGGT GGATTTAAAT CAGGTAATCG GAAATATTCA AAAAGACCTT
GAGATCCTGA TTGAGGAGAA GCAAGGCATG ATACAAATGG ATAAGCTGCC GGTCATTCAT
GGCGTTCCGG TATTGATGTA CCAGCTTTTT TATAATCTGA TCAATAATGC CCTTAAATTT
TCAAAAAGTA ATGTGCCCAG CCGGATCACC ATCACGTATG AGCAGGAAAA GATCTCCTCT
GTGTGGTATG ACCGGATCAC CCTTTCCGAT AACGGGATCG GATTTTCTAA CGATCAGGTA
GATAGGATGT TTGATGCTTT TATACGTTTA AATTCCAAAG ATAAATACGA AGGTACCGGG
CTGGGACTGG CTCTGTGTAA AAAAATTGTT GACAGGCACA ACGGAAATAT TTTTGCTTCA
GGTGAAAAAG ATAGTGGAGC GGTATTCACA ATTTTATTAC CTTTGAAGAA AATTAAATCA
TAA
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| Protein sequence | MGERIRSFDW AATSLGPIST WPQSLLTSVS IMLHSTFPMF IWWGEEMIQF YNDAYRPSLG
NEGKHPSALG QKGGDCWQEI WPVIKPMIDE VIQGKSTWNE NQLIPIYRNG KLEDVYWTFG
YSPIYKEGGT VGGVLVVCTE TTDAVVNLKK IEEDENKLRF SIEAAELATW DYDPATNKFQ
GNNLLKEWFG LVPLEEIDLS LALAVITDTD RPLVVKAIEA ALEHTSGGNY NVEYTIVHPV
SKKARIVKAK GRAWFNEKKI AYRFNGILQD VTEEVSSRMA YEESQDQIRF ASDRLQLALD
AGEIGYYEWA IENDEMHCNS LYKKIFGFSD AHDPTYKEFT SQIFPKDLSV RNNAVQRAIL
VGGVYNAEYR VRHPNDELRW VKSFGKAIYD EKGKPVKLIG MILDITEHKQ FAEELSRQVR
ERTAELKQTN SDLLQFAHVA SHDLKEPVRK VKIFSGRIRD EFKKELPVKG HIYLEKIQHS
TDRMLSMIEG VLMYSTLSNL TQVMEKVDLN QVIGNIQKDL EILIEEKQGM IQMDKLPVIH
GVPVLMYQLF YNLINNALKF SKSNVPSRIT ITYEQEKISS VWYDRITLSD NGIGFSNDQV
DRMFDAFIRL NSKDKYEGTG LGLALCKKIV DRHNGNIFAS GEKDSGAVFT ILLPLKKIKS
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