| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1965 |
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| Symbol | atoC |
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| ID | 4186988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 2294179 |
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| End bp | 2295333 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638071968 |
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| Product | response regulatory protein, sigma 54 related |
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| Protein accession | YP_678573 |
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| Protein GI | 110638364 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0275961 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.129103 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTAAAA TTTTAATCAT CGACGACGAA CGCAGTATCC GCAGTACGTT AACAGAAATT
CTTGAGTACG AAAAATACAC GGTTGAAGAA GCCAAAGATG GTGAAGAAGG ATTAAAAATG
ATTTTAGAAA ACGATTATGA TGTCGTTTTA TGTGATATAA AAATGCCGAA AATGGATGGC
ATGGAAGTTC TTGAAAAAGT ATATACTTCC GGTAAAGACA TCCCTTTCAT TATGATCTCC
GCACACGGCT CTATTGAAAC AGCCATTGAT GCTACACGAA AAGGCGCGTA TGATTTTATT
ACCAAACCAC CAGATCTGAA CCGTTTGCTG GTTAGCGTGC GCAACGCTAT GGACCGTTCT
AATTTAGTAA CGGAAACAAA AACACTTAAA AAGAAAGTTA ATAAATCGTA CCAGATCATC
GGCAAATCCA AAGAGATCGA ACACATCTTT AAAACGATTG AAAAGGTTGC CCCTACAGAC
GCACGTGTAA TGATTACCGG ACCAAACGGT GCAGGTAAAG AACTTGTAGC GCGTGCCATA
CATACACAGA GCAAACGTGC CAACGAATTG CTTATTGAGG TTAACTGTGC AGCCATTCCC
TCTGAATTAA TTGAAAGTGA ATTGTTCGGT CACGAAAAAG GTTCGTTCAC ATCGGCGATC
AAACAACGGA TCGGTAAGTT TGAACAGGCA AGCGGCGGTA CGCTGTTCCT GGATGAAATC
GGCGACATGA GCCTTTCCGC ACAGGCTAAA GTATTACGTG CCTTGCAGGA AAATACCATC
ACACGGGTAG GCGGAGAAAA AGAAATTAAA GTAGATGTGC GTATCCTTGC GGCTACCAAT
AAAAACCTTC AGAAAGAAAT AGCTGAAGGA CGTTTCAGAG AAGATTTGTT TCACCGCATC
AATGTTATTC CTATTGAAGT TCCCGCATTA AAAGATCGTG CAGATGATAT TCCATTATTG
ATCGAACATT TTTTAGCCAT TGTAGCAGAT GATTATGGAA CAACGCCTAA GAAAATTGAT
GCAAAAGCCG TTGCTGAATT AAAAAGCCTC CCATGGACTG GAAATATCCG GGAATTGAAA
AATGTAGTTG AACGTCTGGT AATTATGAGT GATAAAACAA TTACACTCGA AGATGTTAAG
ACCTATGTAA AATAG
|
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| Protein sequence | MPKILIIDDE RSIRSTLTEI LEYEKYTVEE AKDGEEGLKM ILENDYDVVL CDIKMPKMDG
MEVLEKVYTS GKDIPFIMIS AHGSIETAID ATRKGAYDFI TKPPDLNRLL VSVRNAMDRS
NLVTETKTLK KKVNKSYQII GKSKEIEHIF KTIEKVAPTD ARVMITGPNG AGKELVARAI
HTQSKRANEL LIEVNCAAIP SELIESELFG HEKGSFTSAI KQRIGKFEQA SGGTLFLDEI
GDMSLSAQAK VLRALQENTI TRVGGEKEIK VDVRILAATN KNLQKEIAEG RFREDLFHRI
NVIPIEVPAL KDRADDIPLL IEHFLAIVAD DYGTTPKKID AKAVAELKSL PWTGNIRELK
NVVERLVIMS DKTITLEDVK TYVK
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