Gene CHU_1890 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_1890 
Symbol 
ID4186766 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp2209855 
End bp2210676 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content42% 
IMG OID638071888 
ProductZn-dependent protease 
Protein accessionYP_678498 
Protein GI110638289 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00690721 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTGGATAA GTAAGAAAAT AATTTATTTG ACGTCAGCAT TTTTAGTGAC GGGTGCAGTT 
TATACAGCAT GTAAAAGTGT AGCCGTTACA AACCGTAAGC AGCTCAGTCT TGTTTCTGAA
TCGGAAATGA TAAAAATGAG TAATGAACAA TATGCACAAG TCATTCAACA GGGGCCGCTC
AGTACCAATC AGGCTCAGGT GGATATGGTG AAGCGTGTTG GAAATACCAT CAAAGCAGCG
GTTGAAAAAT ATATGGCTGA ACAGGGCCGC AGCAAAGAAT TGGAAGGCTA TAACTGGGAG
TTTAACCTGA TCAAAAATGA TTCTACTGTA AATGCCTGGT GTATGCCTGG CGGTAAAGTT
GCTTTTTATA CAGGTATTAT CCCCGTATGT GTTGATGAGT CAGGCATTGC TGTTGTCATG
GGACATGAAG TAGCGCATGC CATTGCACAT CATGGTAATG AGCGTATGAG CCAGGAAATA
ATAGCTCAGA CAGGCGGACA AGTTGTAGAC TATGCACTTT CAACAAAGTC AGCTCTTACA
AGACAACTAT TTGGAACTGC TTACGGAGCA GGTGCACAAT ATGGTGTAAT CTTACCTTTC
AGCAGAAAGC ATGAATCTGA AGCGGATAAA ATGGGTTTGG TATTTATGGC AATGGCTGGT
TATGATCCGC ATGTTGCAGT TGATTTCTGG AAACGCATGA GTGCAATATC CGGCGGACAG
GCGCCACCTG AGTTTATGTC TACACACCCT GCAGATTCAA GACGTGTAGC CGACCTTGAA
GCATATTTAC CGGAAGCATT AAAGTATTAT CATCCGAAAT AA
 
Protein sequence
MWISKKIIYL TSAFLVTGAV YTACKSVAVT NRKQLSLVSE SEMIKMSNEQ YAQVIQQGPL 
STNQAQVDMV KRVGNTIKAA VEKYMAEQGR SKELEGYNWE FNLIKNDSTV NAWCMPGGKV
AFYTGIIPVC VDESGIAVVM GHEVAHAIAH HGNERMSQEI IAQTGGQVVD YALSTKSALT
RQLFGTAYGA GAQYGVILPF SRKHESEADK MGLVFMAMAG YDPHVAVDFW KRMSAISGGQ
APPEFMSTHP ADSRRVADLE AYLPEALKYY HPK