| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1885 |
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| Symbol | rhlE |
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| ID | 4186761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 2202774 |
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| End bp | 2203940 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638071883 |
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| Product | ATP-dependent RNA helicase |
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| Protein accession | YP_678493 |
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| Protein GI | 110638284 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.00339592 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00748386 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGTGCACAC ATCTTTCTTT GCATATGTCT TTCGCAACAT TAGGTTTATC TCCCGCAATT
TTAAAAGCAT TAGAAAAACA ATTTTATAAT GCGCCGTATC CCATTCAGGA GCAAGCGATC
CCCGCTATTT TAAAAGGTAA GGATATCTTA GGCATTGCGC AGACAGGGTC GGGAAAAACC
GCGAGTTTTG TGTTGCCCAT CTTACAGATG CTGCAAACAA AACCTCTGGG AAAAAACAGA
CACATCAATG CACTGGTGCT TGTGCCGACA AGAGAACTTG CCGTTCAGGT AGGACAGGTA
TTTCAGGCTT TCAGCAATGC ACTTCCAAAT AAAATAAAAT CATTAGCTGT GTATGGCGGT
GTTTCGATCA ATCCGCAAAT GATTCAATTA CAAGGAGTGG AAATATTGAT TGCTACCCCC
GGCCGTTTGC TGGATCTGGT TGATTCAAAG GCCGTGTATT TAAGTGATGT GGAAGTGCTC
GTGCTGGATG AAGCAGATAA GATGTTGAAC CTGGGTTTTA AAGAAGAGAT GGCAAATATC
TTTAAGCTGC TTCCCCAAAA GAGACAGAAT TTGTTGTTCT CTGCAACTCT CGGTAAAGAT
GTAGATACCA TTACTGAATT TTTATTGCAT GATCCGGTTA AAATTGAAAT TATTGCCGAA
GAACAAAACA TTGATCTGAT TCAGCAGATA GCCTACGCGG TAGAAGATGC ACGCAAAGGT
CCTTTGCTGC GGTATCTGAT AAAGGAACAA AAAATGAATC AGGTTTTGAT TTTTACATCT
TCCGTACACC GTGCCGATGC GGTAGTTGAA AAATTAAAAG CGAATAATAT ATTGGCGGCA
GCTTTACATA GCAAGAAAAG CCAGGGGGCA CGCACCGAAG CATTAAAACA GTTTAAGGCA
GGCAATATTC ATGTGCTGGT TGCAACCGAT CTGATGTCTC GTGGCATTGA TATTCCTTTT
TTGCCTTTTG TAATTAATTA TGAATTGCCG CGATCTCCTA AAGACTACAT CCATAGAATC
GGGAGGACGG GTAGAGCAGA AGCATCCGGA GTCGCAATCA ATTTAATCAG TGAAGAAGAA
ACACATCATT TTAGCGTCAT TCAGAAAAAA ATGGGTAAAA AAGTACATCT GACAGATTCT
TCAGGCATGG ATTTACATGG TTTTTAA
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| Protein sequence | MCTHLSLHMS FATLGLSPAI LKALEKQFYN APYPIQEQAI PAILKGKDIL GIAQTGSGKT
ASFVLPILQM LQTKPLGKNR HINALVLVPT RELAVQVGQV FQAFSNALPN KIKSLAVYGG
VSINPQMIQL QGVEILIATP GRLLDLVDSK AVYLSDVEVL VLDEADKMLN LGFKEEMANI
FKLLPQKRQN LLFSATLGKD VDTITEFLLH DPVKIEIIAE EQNIDLIQQI AYAVEDARKG
PLLRYLIKEQ KMNQVLIFTS SVHRADAVVE KLKANNILAA ALHSKKSQGA RTEALKQFKA
GNIHVLVATD LMSRGIDIPF LPFVINYELP RSPKDYIHRI GRTGRAEASG VAINLISEEE
THHFSVIQKK MGKKVHLTDS SGMDLHGF
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