| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1845 |
|---|
| Symbol | |
|---|
| ID | 4185916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 2163297 |
|---|
| End bp | 2164967 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638071844 |
|---|
| Product | putative ABC transporter ATP-binding protein |
|---|
| Protein accession | YP_678454 |
|---|
| Protein GI | 110638245 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000460921 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAC AAATTATATT TTCTATGGCT GGTGTGAGTA AGATCATACC ACCCAAACGT
CAGATTATTA AAAACATTTA TTTGTCTTTT TTCTATGGAG CCAAAATTGG TGTCTTAGGT
TTAAACGGTT CGGGTAAGTC TACCCTGCTT AAAATCATTG CAGGTATTGA TAAAGAATTT
ATCGGTGACG TGGCTTTCAG CCCGGGTTAT ACGGTTGGTA TGCTGGAGCA GGAACCAAAA
CTTGACCCGA CTAAAACGGT TAAAGAAATC GTTGAAGAAG GTGTTCAGGA AGTAGTTGAT
CTGTTAAAGA AATTCGAAGA TATCAATCTG AAATTCGGTG AAGAAATGAC CGACGATCAG
ATGACAAAAC TGATTGAAGA GCAAGGACGC ATACAGGAAT TACTGGATCA GCACAATGCA
TGGGAACTGG ATACAAAGCT GGAACGCGCT ATGGACGCCC TTCGCTGTCC GCCCGGTGAT
GCAAAGATTG AACACTTATC CGGCGGTGAA AAAAGACGTG TTGCTTTATG CCGCTTATTG
CTTCAGGAGC CGGATGTATT ATTACTTGAT GAACCTACCA ACCACCTGGA TGCGGAGTCT
GTTGACTGGC TGGAACAACA CTTACAGCAA TATGCAGGTA CGGTGATTGC CGTAACCCAC
GATAGATATT TCCTGGATAA CGTTGCAGGC TGGATCCTGG AACTTGACCG TGGTGAAGGT
ATTCCATGGA AAGGAAATTA TTCTTCCTGG CTGGATCAGA AACAAACCCG TTTATCTCAG
GAAGAAAAAA CAGAATCAAA ACGTCAGAAG ACGTTACAGC GTGAGCTTGA ATGGGTACGT
ATGTCTCCGA AGGCACGTCA GGCCAAGTCT AAGGCTCGTA TCAGCGCCTA TGATAAATTA
TTAGGCGAAG AAACAAAGGA AAAAGAAGAA AGGCTGGAAA TGTTTATTCC CGCAGGCAGG
CGTTTGGGCA GCAAAGTAAT TGAAGTACAA AACGTATCCA AAGCCTTTGG CGATAAATTA
CTGTTCGATG ATCTGAGCTT TAATCTGCCG CAAGGTGGCA TTGTTGGTAT TATCGGGCCC
AATGGTGCAG GTAAAACAAC GTTGTTCAAA TTGATTACCG GACAGGCGCA GCCGGACTCT
GGTTCTTTTG CTGTTGGGGA GACTGTAGAC ATTGGGTATT ACGATCAGGA ACACTCAGGT
CTGGATCCTG AAAAATCTGT ATTTGAAACG ATCTCCGGCG GAACAGAACA TCTGATGCTT
GGTAACAAGC AGGTGAACTC CCGTGCGTAT GTAAGCCGTT TCAACTTTGG CGGATCAGAT
CAGGAAAAAA AGATTGGTGT ATTGTCGGGT GGTGAACGGA ACCGTGTACA CCTTGCCATG
ACATTAAAAA CCGGTGCGAA CCTGTTACTG CTCGATGAGC CTACCAATGA TCTCGATGTA
AACACACTGC GTGCGCTGGA AGAAGCACTG GAGAACTTTG GCGGATGTGC GGTGATTATT
TCCCACGACC GCTGGTTCCT GGATCGTGTG GCAACACACA TACTTGCTTT CGAAGGCGAT
TCTCAGGTAT ATTGGTTTGA AGGAAACTAT TCCGATTACG AAGAAAATAA GAAAAAACGT
TTGGGTGATG TTGGCCCGCA ACGTATCCGG TATAAAAAAC TGGTTAAATA A
|
|---|
| Protein sequence | MSEQIIFSMA GVSKIIPPKR QIIKNIYLSF FYGAKIGVLG LNGSGKSTLL KIIAGIDKEF
IGDVAFSPGY TVGMLEQEPK LDPTKTVKEI VEEGVQEVVD LLKKFEDINL KFGEEMTDDQ
MTKLIEEQGR IQELLDQHNA WELDTKLERA MDALRCPPGD AKIEHLSGGE KRRVALCRLL
LQEPDVLLLD EPTNHLDAES VDWLEQHLQQ YAGTVIAVTH DRYFLDNVAG WILELDRGEG
IPWKGNYSSW LDQKQTRLSQ EEKTESKRQK TLQRELEWVR MSPKARQAKS KARISAYDKL
LGEETKEKEE RLEMFIPAGR RLGSKVIEVQ NVSKAFGDKL LFDDLSFNLP QGGIVGIIGP
NGAGKTTLFK LITGQAQPDS GSFAVGETVD IGYYDQEHSG LDPEKSVFET ISGGTEHLML
GNKQVNSRAY VSRFNFGGSD QEKKIGVLSG GERNRVHLAM TLKTGANLLL LDEPTNDLDV
NTLRALEEAL ENFGGCAVII SHDRWFLDRV ATHILAFEGD SQVYWFEGNY SDYEENKKKR
LGDVGPQRIR YKKLVK
|
|---|
| |