| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1775 |
|---|
| Symbol | pdxH |
|---|
| ID | 4186847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 2082256 |
|---|
| End bp | 2082903 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638071774 |
|---|
| Product | pyridoxamine 5'-phosphate oxidase |
|---|
| Protein accession | YP_678384 |
|---|
| Protein GI | 110638175 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0259] Pyridoxamine-phosphate oxidase |
|---|
| TIGRFAM ID | [TIGR00558] pyridoxamine-phosphate oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0503905 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGA ATTTAGCTGA TATCAGAAAA GAGTATTCAA GCCGAAGCCT GGATACAAAA
GATATTCTTC CTTCCCCGGT AGAACAGTTC CGTTTATGGC TGAATCAGGC ACTGGAAGCC
GGCGCGCTGG AAGCAACAGC AATGAACCTG GCTACGGTAA ATGAAGCCGG TAAGCCAGCA
TCAAGAATTG TTTTATTAAA AGGAATTGAA CACGGCAGCT TTGTATTTTA TACCAATTAT
AAAAGTCACA AAGGCAGCGA CATTACACAC AATTCATTTG GTGCATTAAA CTTTTTCTGG
CCCGAACTGG AACGACAGGT ACGTATTGAA GGAAAGATCA CTAAAGTTTC ACCGGAAGAT
TCAGATACCT ATTTTAACAG CAGGCCCTAT CAAAGTAAAA TTGGTGCATG GGTATCGGAT
CAAAGTAAAG AAGTTGCCAG CCGGGAAGAA CTTGAAAGTA AGATTACCTA TTACGAAAAT
AAATATCCGG AAGGTTCTGT TGTACCCAGG CCAGCACACT GGGGGGGATA TACACTGAAG
CCAGCATATT TTGAGTTCTG GCAGGGCAGA CCAAGCCGTC TGCATGACCG GATTGTATAT
GATCTGGAAG GTGATATCAG ATGGAATGTG TTCAGGATAT GCCCGTAA
|
|---|
| Protein sequence | MKTNLADIRK EYSSRSLDTK DILPSPVEQF RLWLNQALEA GALEATAMNL ATVNEAGKPA
SRIVLLKGIE HGSFVFYTNY KSHKGSDITH NSFGALNFFW PELERQVRIE GKITKVSPED
SDTYFNSRPY QSKIGAWVSD QSKEVASREE LESKITYYEN KYPEGSVVPR PAHWGGYTLK
PAYFEFWQGR PSRLHDRIVY DLEGDIRWNV FRICP
|
|---|
| |