Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1713 |
Symbol | yiaD |
ID | 4185489 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 2014128 |
End bp | 2016023 |
Gene Length | 1896 bp |
Protein Length | 631 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638071712 |
Product | outer membrane protein |
Protein accession | YP_678322 |
Protein GI | 110638113 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0180372 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCGTTGT TTAGTGTTTT TTCAGTTGCA CAAACCACTA CCTATCATAC AAAAAACAAG AAATCAATCT CCGCGTATCA GGAAGCCGAG CTCTTACAGC AGCAGCGCAG ATGGAACGAA GCAATCAATG TGCTTGATGC TGTTATACAA AAGGATACAG GCTTTGTAGA AGCGTATTAT AAAGTCGGGT CTATGTACAT GGCTATGGGA AATAAAACAG CTGCAGCACG ATATTTTTGT AAAGGAGCGG ATCTGGACCC CAGTGTTAAA GCCTTTGCCG GAGCGTATTT TACAGCAGGG GAATTATCGT ATAATGAAGG GGAGTATGTA CGTGCGAAAC GCTATTTTGG CTATGCACTA AATGTTCAAT CCGGCGATAA AAAAATTAAA GAGCAAACTC CTGTATATAT TGCTAAATGT GATTTTGCAA TTGATATGAT GAAACATCCG GTAGATTTTA AACCGGTATT AATGACACCG CCTATCAATA CTGCCTTCGC GCAGTCTCAT CCGGTACTTA CCGCGGATGG TAAAACACTT TATTATACCA CACTATCCGG TTTATCCAGG CAGGATGATG AAAATATCGT TACTTCTTCT TATGTAAACG GCAAATGGTC TGAACCTGTC TCCATATCCG ATAACATCAA TTCAAAAGAA AATGAAGGAA CGTGCTCCAT CTCCATGGAT GGAAATTCCC TGGTATTTGT AGGTTGCGGC AAAGCAGACG GATTAGGATC CTGTGATATT TACATTTCAA AAAAAGTAAA CAATGTATGG TCTAAACCAA CAAATTTAGG GCCTGCAGTA AACAGTACTT CCTGGGATTC GCACCCGAGT TTATCGGCAG ATGGCCGAAC CTTGTATTTT GTTTCAGCAC GTAAAGGAGG GTTTGGAAAG GAGGATATTT ATGTGACGCA TTTGGATGAA AAGGGTATCT GGTCGCCTGC ACAAAATGCA GGATCATCAG TAAATACAAG CGGTACAGAA TTTTCGCCAT TCATCCATGC CGACGGCACA ACCTTGTATT TTTCATCCAA TGGTTTATTA GGCATGGGGG GGCTGGATAT TTTTTATACA ACCGGCAACG ATACAACCTG GGCTGTACCA AAGAATATCG GTTATCCATT AAATACCTAC GCCAATGATG AAACGTTATT CATTACCGTA GATGGCGCCA AAGGATATTA CTCCAGATTT GATGGTACAA ATGTTAACTA CAACAGCAGA ATATTTTTGT ACGAGTTCGA TGTTCCTCAA TCATTAAAGC CGGGCAGGAT AAGTACGTTT GCTAAAGGCC ATATTTATGA CAAGCAAACA AAGAAGCCAT TGGGCGCACG TGTTGAATTG GTTGATATTG AAACAAACAC AGTCACACAG GCTGTTCAGT CAGATAGTAT TACAGGTGAA TATACCATTG TTATTACAGA AGGAAAGGAG TATGCCGTAT ATGTAAACAG AAATAAATAC TTATTCGAAT CACTGAACGT TAATTATAAA AATCCAACGA GTTTTGATGC ACTTACATTG GATATTTATC TCACACCTAT TATATCTGGT TCACACGTAA CACTCAATAA TATTTTCTTT CAAACCAATT CATATCAATT GGAAGAAAAA TCAATCAGTG AATTGAAAAA GCTTATTAAT TTTATTCAGA TTAATCCCGC ACAACGCGTT GAACTGGCCG GATACACCGA TAATGTTGGT ACAGCAGAGG CTAACCTGAA ACTGTCAGCT ATGCGTGCAA AAGCCGTTTA TGATTATTTA ATACAACACG GAATTAAACC AGCAGGAATT ACGTATAAAG GATATGGAGC CGCTAGTCCT GTAGCAGATA ATAATTCAGA AGAAGGGCGT CAAAAAAACA GACGGTTGGA AATAAAAATA TTATAA
|
Protein sequence | MALFSVFSVA QTTTYHTKNK KSISAYQEAE LLQQQRRWNE AINVLDAVIQ KDTGFVEAYY KVGSMYMAMG NKTAAARYFC KGADLDPSVK AFAGAYFTAG ELSYNEGEYV RAKRYFGYAL NVQSGDKKIK EQTPVYIAKC DFAIDMMKHP VDFKPVLMTP PINTAFAQSH PVLTADGKTL YYTTLSGLSR QDDENIVTSS YVNGKWSEPV SISDNINSKE NEGTCSISMD GNSLVFVGCG KADGLGSCDI YISKKVNNVW SKPTNLGPAV NSTSWDSHPS LSADGRTLYF VSARKGGFGK EDIYVTHLDE KGIWSPAQNA GSSVNTSGTE FSPFIHADGT TLYFSSNGLL GMGGLDIFYT TGNDTTWAVP KNIGYPLNTY ANDETLFITV DGAKGYYSRF DGTNVNYNSR IFLYEFDVPQ SLKPGRISTF AKGHIYDKQT KKPLGARVEL VDIETNTVTQ AVQSDSITGE YTIVITEGKE YAVYVNRNKY LFESLNVNYK NPTSFDALTL DIYLTPIISG SHVTLNNIFF QTNSYQLEEK SISELKKLIN FIQINPAQRV ELAGYTDNVG TAEANLKLSA MRAKAVYDYL IQHGIKPAGI TYKGYGAASP VADNNSEEGR QKNRRLEIKI L
|
| |