Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1710 |
Symbol | ompA |
ID | 4185486 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 2011361 |
End bp | 2013283 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638071709 |
Product | OmpA family peptidoglycan-associated lipoprotein |
Protein accession | YP_678319 |
Protein GI | 110638110 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00224676 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.770798 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAT ATCTGTTTTT GGTGTTGTGT TGTCTTTTTT ACGGACAAGT TTCTGGACAG GTAATTCCTG GAAATTATGA TAAAAACATA AAGAAAGGTA AGGAACATAT TGACATGGAA GAGTATCATC AGGCGCTTCC CTTTTTTCTG GAAGCCTGGA AAGTAGATAC CACCGATTAT AAACTGGCAT TCAATATTGC AAAATGCTAT TTCCAGATCG GGCATGAATT AAATGCCTTT CCATACCTGG ATAATGCTAA AGTAGGAAGT AAAGACCCCA TTATAACTTT TTATTACGCA CGTTGTTTTC ATTTACAGCA TAAATTTGAA GCAGCCATTG CTTTATACCG CGAATACCAG CAAACATTAG ATGCAGACGA ACCTGAATAT TTTGAAATGC ATCAATATAT TGCGAACTGC AAAAATGGTA TTGAGTTAGT GAAAACCCCT GTTAAAGTAA AAATACGAAA CCTTGGCCCT GTAATTAACT CTCCATATCC GGATTATGTA CCTGTAATTT CTGCCGATGA AACAGAGTTG CTGTTTACAT CCAGAAGGCC TAGTACAACG GGTGGTGGTA AAGACCTCGA AGATGGTTTT TATTTCGAAG ATATTTACCA GTCAAGCAGA TTAAACGACA CACTTTGGTC TGAACCTGTT GACATCGGTA ATGGCATCAA CACCGAATCA CATGACGCCT GTGTGGCCCT ATCTCCGGAT GGTATGGAAC TGATCATGTA TCGTCATTCC GGTACAGACG GTGGTGATTT ATATTCGAGT ACATTAAAAG GAGAAGTTTG GGAAAAACCT CAACGCTTAG GCAACACAAT CAATACACCT TACTGGGAGC CAAGCGCATC TATTTCAGCC GATGAAAAGG CAATCTTCTT TACCAGTAAC CGTAAAGGTG GTTTGGGTGG TACAGATATT TACATGGTTC GTATGAAAGA CAACGGCGAT TATGGCCCGG CAATTTTATT AGGCCCGTCT ATTAACACAA TTCATGATGA AGATGCGCCA TTTATTCATG CAGATGGCAA AACATTATAT TTCAGCTCTA AAGGCCATAA ATCTATGGGC GGCTACGATA TCTTTTATTG TACCATCGAT ATTGAAACAG GTGAAATCCT GACTACGCCT CAGAATATCG GATACCCGAT CAATACAGCA GACGATGATG TATTTTTTGT GTGGTCTGCA GATGGTAAAA GAGCCTATTT CTCTTCTGAA CGGGCTGGTG GCTACGGAGA AAAAGATATC TATGTATTAG AGCGTGAATC GGCTCCTAAA GCACCAACAG TACTGTTTAA AGGACAGATT GTTGCCTGCG ACGATCATCA CCCGGTTACG GCAACCATTT TTGTAACAGA TTTACATACA CAGAAAATTG TAGGCGTATA CAATTCGAAC AGCTTTACAG GAAAATATAC AATCTCATTA CCAGCGGGTA AAAATTACGG CATTTCAGTA GAAGCTTCGG GATATCTGTT TGAATCTAAA AATATTAACT TCCCAAAACA GGATGGGTAT ATTGAACTGA TAGATACTAT TTGTATGAAT AAATTGAAAG TAAACACGTC AATCATTCTT AGAAATGTAT TTTTTGATGT AGATAAAGCC ACACTGAGAC CGGAGTCTGT TCAGGAATTA GATAAACTCG TGGATATATT AAGACACAAT CCGAATTTGA AAATAGAATT GTCAGGACAT ACCGATTCAG ATGGTAATGA CGACCACAAT ATGGTTTTAT CCGACAACAG AGCAAAGGCT GTGGTAGATT ATCTGATTAA AAAAGGCGGA ATTAACCCAA ACAGATTAAC CTGGAAAGGG TATGGGGAAA CGAAACCAAT AGAACTGAAC GATACGCCTG AACATAAGCA GCAGAACAGA AGAACAGAAG TGAAGATTCT AAGCAATGAA TAA
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Protein sequence | MKKYLFLVLC CLFYGQVSGQ VIPGNYDKNI KKGKEHIDME EYHQALPFFL EAWKVDTTDY KLAFNIAKCY FQIGHELNAF PYLDNAKVGS KDPIITFYYA RCFHLQHKFE AAIALYREYQ QTLDADEPEY FEMHQYIANC KNGIELVKTP VKVKIRNLGP VINSPYPDYV PVISADETEL LFTSRRPSTT GGGKDLEDGF YFEDIYQSSR LNDTLWSEPV DIGNGINTES HDACVALSPD GMELIMYRHS GTDGGDLYSS TLKGEVWEKP QRLGNTINTP YWEPSASISA DEKAIFFTSN RKGGLGGTDI YMVRMKDNGD YGPAILLGPS INTIHDEDAP FIHADGKTLY FSSKGHKSMG GYDIFYCTID IETGEILTTP QNIGYPINTA DDDVFFVWSA DGKRAYFSSE RAGGYGEKDI YVLERESAPK APTVLFKGQI VACDDHHPVT ATIFVTDLHT QKIVGVYNSN SFTGKYTISL PAGKNYGISV EASGYLFESK NINFPKQDGY IELIDTICMN KLKVNTSIIL RNVFFDVDKA TLRPESVQEL DKLVDILRHN PNLKIELSGH TDSDGNDDHN MVLSDNRAKA VVDYLIKKGG INPNRLTWKG YGETKPIELN DTPEHKQQNR RTEVKILSNE
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