| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1710 |
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| Symbol | ompA |
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| ID | 4185486 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 2011361 |
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| End bp | 2013283 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638071709 |
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| Product | OmpA family peptidoglycan-associated lipoprotein |
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| Protein accession | YP_678319 |
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| Protein GI | 110638110 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00224676 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.770798 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAT ATCTGTTTTT GGTGTTGTGT TGTCTTTTTT ACGGACAAGT TTCTGGACAG
GTAATTCCTG GAAATTATGA TAAAAACATA AAGAAAGGTA AGGAACATAT TGACATGGAA
GAGTATCATC AGGCGCTTCC CTTTTTTCTG GAAGCCTGGA AAGTAGATAC CACCGATTAT
AAACTGGCAT TCAATATTGC AAAATGCTAT TTCCAGATCG GGCATGAATT AAATGCCTTT
CCATACCTGG ATAATGCTAA AGTAGGAAGT AAAGACCCCA TTATAACTTT TTATTACGCA
CGTTGTTTTC ATTTACAGCA TAAATTTGAA GCAGCCATTG CTTTATACCG CGAATACCAG
CAAACATTAG ATGCAGACGA ACCTGAATAT TTTGAAATGC ATCAATATAT TGCGAACTGC
AAAAATGGTA TTGAGTTAGT GAAAACCCCT GTTAAAGTAA AAATACGAAA CCTTGGCCCT
GTAATTAACT CTCCATATCC GGATTATGTA CCTGTAATTT CTGCCGATGA AACAGAGTTG
CTGTTTACAT CCAGAAGGCC TAGTACAACG GGTGGTGGTA AAGACCTCGA AGATGGTTTT
TATTTCGAAG ATATTTACCA GTCAAGCAGA TTAAACGACA CACTTTGGTC TGAACCTGTT
GACATCGGTA ATGGCATCAA CACCGAATCA CATGACGCCT GTGTGGCCCT ATCTCCGGAT
GGTATGGAAC TGATCATGTA TCGTCATTCC GGTACAGACG GTGGTGATTT ATATTCGAGT
ACATTAAAAG GAGAAGTTTG GGAAAAACCT CAACGCTTAG GCAACACAAT CAATACACCT
TACTGGGAGC CAAGCGCATC TATTTCAGCC GATGAAAAGG CAATCTTCTT TACCAGTAAC
CGTAAAGGTG GTTTGGGTGG TACAGATATT TACATGGTTC GTATGAAAGA CAACGGCGAT
TATGGCCCGG CAATTTTATT AGGCCCGTCT ATTAACACAA TTCATGATGA AGATGCGCCA
TTTATTCATG CAGATGGCAA AACATTATAT TTCAGCTCTA AAGGCCATAA ATCTATGGGC
GGCTACGATA TCTTTTATTG TACCATCGAT ATTGAAACAG GTGAAATCCT GACTACGCCT
CAGAATATCG GATACCCGAT CAATACAGCA GACGATGATG TATTTTTTGT GTGGTCTGCA
GATGGTAAAA GAGCCTATTT CTCTTCTGAA CGGGCTGGTG GCTACGGAGA AAAAGATATC
TATGTATTAG AGCGTGAATC GGCTCCTAAA GCACCAACAG TACTGTTTAA AGGACAGATT
GTTGCCTGCG ACGATCATCA CCCGGTTACG GCAACCATTT TTGTAACAGA TTTACATACA
CAGAAAATTG TAGGCGTATA CAATTCGAAC AGCTTTACAG GAAAATATAC AATCTCATTA
CCAGCGGGTA AAAATTACGG CATTTCAGTA GAAGCTTCGG GATATCTGTT TGAATCTAAA
AATATTAACT TCCCAAAACA GGATGGGTAT ATTGAACTGA TAGATACTAT TTGTATGAAT
AAATTGAAAG TAAACACGTC AATCATTCTT AGAAATGTAT TTTTTGATGT AGATAAAGCC
ACACTGAGAC CGGAGTCTGT TCAGGAATTA GATAAACTCG TGGATATATT AAGACACAAT
CCGAATTTGA AAATAGAATT GTCAGGACAT ACCGATTCAG ATGGTAATGA CGACCACAAT
ATGGTTTTAT CCGACAACAG AGCAAAGGCT GTGGTAGATT ATCTGATTAA AAAAGGCGGA
ATTAACCCAA ACAGATTAAC CTGGAAAGGG TATGGGGAAA CGAAACCAAT AGAACTGAAC
GATACGCCTG AACATAAGCA GCAGAACAGA AGAACAGAAG TGAAGATTCT AAGCAATGAA
TAA
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| Protein sequence | MKKYLFLVLC CLFYGQVSGQ VIPGNYDKNI KKGKEHIDME EYHQALPFFL EAWKVDTTDY
KLAFNIAKCY FQIGHELNAF PYLDNAKVGS KDPIITFYYA RCFHLQHKFE AAIALYREYQ
QTLDADEPEY FEMHQYIANC KNGIELVKTP VKVKIRNLGP VINSPYPDYV PVISADETEL
LFTSRRPSTT GGGKDLEDGF YFEDIYQSSR LNDTLWSEPV DIGNGINTES HDACVALSPD
GMELIMYRHS GTDGGDLYSS TLKGEVWEKP QRLGNTINTP YWEPSASISA DEKAIFFTSN
RKGGLGGTDI YMVRMKDNGD YGPAILLGPS INTIHDEDAP FIHADGKTLY FSSKGHKSMG
GYDIFYCTID IETGEILTTP QNIGYPINTA DDDVFFVWSA DGKRAYFSSE RAGGYGEKDI
YVLERESAPK APTVLFKGQI VACDDHHPVT ATIFVTDLHT QKIVGVYNSN SFTGKYTISL
PAGKNYGISV EASGYLFESK NINFPKQDGY IELIDTICMN KLKVNTSIIL RNVFFDVDKA
TLRPESVQEL DKLVDILRHN PNLKIELSGH TDSDGNDDHN MVLSDNRAKA VVDYLIKKGG
INPNRLTWKG YGETKPIELN DTPEHKQQNR RTEVKILSNE
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