Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1704 |
Symbol | relA |
ID | 4185480 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 2003487 |
End bp | 2005685 |
Gene Length | 2199 bp |
Protein Length | 732 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638071702 |
Product | GTP diphosphokinase (guanosine 3',5'-polyphosphate synthase) |
Protein accession | YP_678313 |
Protein GI | 110638104 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0084674 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.280503 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGGTTG ATGTTGAAAA GGAGAATAAA GAAATAATAA AAAGATACCG TGCATTGCTT CATGCAGCAA AACCTATTTT AAAAGATGGG GATGCTAAAA TTATAAAAAA AGCATTTTTT ACATCGGTAC AGGCGCATAA AGATATGCGT CGGAAATCCG GTGAGCCATA TATATATCAT CCATTAGCAG TTGCTCAGAT TGCAGTTGAA GAAATTGGTT TGGGTACAAC ATCCATCGTT GCGGCCTTGC TGCACGATGT GGTAGAAGAT ACACACCTGG AACTGAGGGA TCTGGAAAGG GATTTTGGCC CAAAGGTTGC TACCATCATC GACGGGCTTA CTAAAATCTC CGGTGTCTTC GAACACGGAA GTTCGCAGCA GGCAGAAAAT TTCAGAAAAA TGATCCTTAC ACTTTCAGAA GATGTACGGG TTATTCTGGT AAAGCTTGCC GACCGTTTAC ACAACATGCG TACATTAGAA AGCATGCCGC GTGATAAACA GCTGAAAATT GCTTCGGAAA CCATGTATTT ATATGCACCT CTGGCGCACC GCCTGGGTTT ATATGCCATC AAATCTGAAC TTGAAGATCT GTATTTAAAA TATACGGATA CCGACCGCTA TAATTTTATA GCCGATAAAG TTGCCAAATC AGATGCTGCA CGTGAAAAAA CAACAAAAGA TTTCGCAGCT CCTCTGGAAA TACCACTCAA ACGTGCCGGC CTTAAATTCA AAATCAAAGG GCGCACAAAA TCTATTTATT CCATTCATCA GAAAATGCAG CAGCAGAATA TACCTTTTGA AGAGGTCTAT GATTTGTTTG CCATCCGCTT AATTCTGGAA GCCGATCTGG CCGAAGAAAA AAGTGTTTGC TGGAAAGCTT ATTCAATCGT TACCGATTTT TATAAACCAA ATCCGGATCG CTTAAAGGAC TGGGTGAGTA CGCCAAAAGC AAATGGCTAC GAATCGCTGC ACACAACGGT TATGAGTAAA TCCGGACAAT GGGTGGAAGT GCAGATCCGT ACCAGGCGTA TGGATGATAT TGCCGAAAAA GGATATGCGG CACACTGGAA ATACAAAGAA AATAAAACGA CGACTAAAGA GCACGGTATT GAAGACTGGA TCCGTAAAGT TCGGGAACTG ATTGAAAATA ACGACTTCTC AGCCATAGAA TTTGTCAACG AATTCAGACA GAATTTATTC AGCGAAGAGG TGTTTGTGTT TACACCTAAA GGCGATTTAA AAACGCTGCA ATTCGGCGCA ACAGCACTGG ATTTTGCCTT TGAGATCCAC ACAAAGATCG GCGAACACTG TCTTGGCGCA AAAGTGAACC AAAAACTGGT ACCGTTGAGT TATCAGTTAA ATAACGGCGA CCAGATTGAA ATATTAACCT CAGGCAAACA AAAACCTTCA GAAGATTGGC TGAAGTTTGT TGTTACATCG AAGGCCCGTA CAAAAATCAA GGAATCGCTT AAAGAAGAAA AGAAGATTAT TGCACAGGAT GGTAAGGCAA TGGTAGAACG TAAGCTGAGC CATTTGAAAA TACCATTGAA TAATGAAACA ATCAACAAAA TGTTATTACT CTTTAATGTG AAAACACCTT TAGAGTTTTA TTATAATGTT GCTAAAGACA TTATTCCGCC CAGCCAGCTG AAACGCTTAA AAGATCCGGA AAAGAAACCG GAACCTTCCA AACGTCCGGT TGAAGTAGAT CCGGATAAAA AATCAACATC GGTAAAAGTT TCCGATAAAG ATATGGTTTT GATCGGTGAC GGCATGGACA AAATCGATTA CAACCTGGCA AAATGTTGTA ACCCGATTCC CGGAGATGAA GTGTTCGGCT TCGTAACGGT AAGTGAGGGC ATCAAGATCC ACCGCACCAA TTGCCCGAAT GCAGTAGAAT TAATGTCACA ATATGGTTAC CGGATTGTAA AAGCAAAATG GACGTCTCAG AAAGAACTTG CTTTCTTAAC CGGGTTAAAA ATTGTAGGTG CCGATCGGGT AGGCATTATA AACGATGTTA CCAAAGTGAT CTCCACACAG CTGAAAGTAA ATATCCGTTC TATTACCATT GACACCGACG ATGGTATCTT TGAAGGTACC ATGATGGTAT TTGTAAACGA TACAGAACAT CTGAACACCC TCATTTCCAA GCTAAAAGAA ATTTCAGACA TTATTAGCGT GTCTCGTATA AACAGTTGA
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Protein sequence | MVVDVEKENK EIIKRYRALL HAAKPILKDG DAKIIKKAFF TSVQAHKDMR RKSGEPYIYH PLAVAQIAVE EIGLGTTSIV AALLHDVVED THLELRDLER DFGPKVATII DGLTKISGVF EHGSSQQAEN FRKMILTLSE DVRVILVKLA DRLHNMRTLE SMPRDKQLKI ASETMYLYAP LAHRLGLYAI KSELEDLYLK YTDTDRYNFI ADKVAKSDAA REKTTKDFAA PLEIPLKRAG LKFKIKGRTK SIYSIHQKMQ QQNIPFEEVY DLFAIRLILE ADLAEEKSVC WKAYSIVTDF YKPNPDRLKD WVSTPKANGY ESLHTTVMSK SGQWVEVQIR TRRMDDIAEK GYAAHWKYKE NKTTTKEHGI EDWIRKVREL IENNDFSAIE FVNEFRQNLF SEEVFVFTPK GDLKTLQFGA TALDFAFEIH TKIGEHCLGA KVNQKLVPLS YQLNNGDQIE ILTSGKQKPS EDWLKFVVTS KARTKIKESL KEEKKIIAQD GKAMVERKLS HLKIPLNNET INKMLLLFNV KTPLEFYYNV AKDIIPPSQL KRLKDPEKKP EPSKRPVEVD PDKKSTSVKV SDKDMVLIGD GMDKIDYNLA KCCNPIPGDE VFGFVTVSEG IKIHRTNCPN AVELMSQYGY RIVKAKWTSQ KELAFLTGLK IVGADRVGII NDVTKVISTQ LKVNIRSITI DTDDGIFEGT MMVFVNDTEH LNTLISKLKE ISDIISVSRI NS
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