Gene CHU_1670 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_1670 
SymbolmurI 
ID4186531 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp1960117 
End bp1961151 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content39% 
IMG OID638071664 
ProductL-alanine-DL-glutamate epimerase 
Protein accessionYP_678280 
Protein GI110638071 
COG category[M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only 
COG ID[COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAAAA GCTATTGGGA ACAGGCACAT TTGCAGCTGC CATTAAAATA TACCTGGAAA 
ATCTCACGGA ATGCTTCTAC TGAAAAAATA AATGTGATTG TTTTTCTGTG CATAGACGGA
CGTACATATC CCGGAGAAGC GGCTCCCAAT GTTCGTTATG GCGAATCTGT AGAATTGATT
GATCTGCAGT TTAAACATTT CCAGACAGTC TGGAAAGATT CGTTGCTGCA GGATGAACAT
GCATACAACG ATGTGCTGGA TGGATTGAAA CTATGTCAAT CCTTACGCTT TGCGCTGGAA
AGTGCGTATG TGCATGCCCG TTGTGATAAA GATCCGGCTT TTTTTGAACG CTATACGGGA
ATAAAAATGC ATACATCTCC CCTTGCCACT TCCTATACCT TACCCATTAT GGATCCGGGC
CAGATACAGG AATTTATACA AACGCATGAT CTCACCCGTT TTGATACCCT GAAAATTAAA
ACAGGAAAAG AAGAAAGTAA AGAATTGATC AAAACCGCGA GCCGGTATTT TGATAAAATG
ATCCGGGTGG ATGCCAATGA AGCCTGGACA GACCCTGATT TATTGATAAA AGAACTGGAA
GAATTAAAGC GGATTCCGTT GGAATTTATT GAACAACCCT TTGAGTCAGC ACAAAAGGAT
GCCTATAAAT ACTTTAAAAA GTATAGTAAA ATACCTGTAA TTGCGGATGA GTCGATAACT
TTTGCCCCGG ATTTAAAAGA AATTAAAGAA CTTTTCCACG GTGTAAATAT GAAGTTAATG
AAGGCGGGCG GGTATCGCGA AGGTGCTAAT ATATTATTGA AATCCAAAGA GTTAGGGCTT
AAAACGATGG TGGGTTGTAT GGTCGAAACT ACCCTTGGAA TACGGTCAGG AATGTGGATT
TCAGGCCATT CCGACTACAT TGATTTAGAT GGAAGTTTTG TAATTGACAA TGAACCTTTT
AAATTAGTAT CCGAAAACCT TGGAAGGTTA GTCATTAAAC AAGTAAATTT TTTCATTGAA
AAATGGCAAA AGTAG
 
Protein sequence
MEKSYWEQAH LQLPLKYTWK ISRNASTEKI NVIVFLCIDG RTYPGEAAPN VRYGESVELI 
DLQFKHFQTV WKDSLLQDEH AYNDVLDGLK LCQSLRFALE SAYVHARCDK DPAFFERYTG
IKMHTSPLAT SYTLPIMDPG QIQEFIQTHD LTRFDTLKIK TGKEESKELI KTASRYFDKM
IRVDANEAWT DPDLLIKELE ELKRIPLEFI EQPFESAQKD AYKYFKKYSK IPVIADESIT
FAPDLKEIKE LFHGVNMKLM KAGGYREGAN ILLKSKELGL KTMVGCMVET TLGIRSGMWI
SGHSDYIDLD GSFVIDNEPF KLVSENLGRL VIKQVNFFIE KWQK