Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1663 |
Symbol | rcsC |
ID | 4186524 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 1949384 |
End bp | 1952665 |
Gene Length | 3282 bp |
Protein Length | 1093 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638071657 |
Product | sensor for ctr capsule biosynthesis, histidine kinase acting on RcsB |
Protein accession | YP_678273 |
Protein GI | 110638064 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.749752 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.503363 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACATTA CCGAAAATAA CCACACACAT TATTTCCTTT CCGGCGGCGG AGAGATGGGA GAGCTGACCC GCTCGTTCGA CTGGTCAAAA ACATCCATCG GAACACCCGA CCAATGGCCG CACAGTTTAA ACACCACGCT CGGTATTATT CTGCACTCCT CCTTTCCGAT GTTTCTGTTC TGGGGAGAAG AACTGATCTG TTTTTACAAC GATGCGTACC GGCCAAGCCT GGGGATCAAT GGGAAACACC CGGCACTGGG CAAAAAAGCA AAGGATGTAT GGCCGGATAT CTGGGATTTC ATAGCCCCGC TCATTAAACA GGTATTGGAG ACCAACGAAG CCGTATGGTA TGAAGATCAG CTGCTGCCCA TCTACCGTAA TGGACAGATG GAAGACGTAT ACTGGACCTT CAGCTACAGC CCGGCATATG GCGATGATGG AAAAGTAAGC GGCGTATTTG TTACCTGTAC CGAAACAACA AACAAAGTAA AAAATCAAAA AAGGCTGGAA GAAAGTGAAG AAAAATTCCG CACACTGATT GAAGAAATTC CTGTATCTAC CTGTGTACTG AAAGGTAAAG ATATGGTGAT AGACCTTGCC AATGAAATGG CAATACAAAC CTGGGGCAAA GGTCCGGATA TCATTGGCAG GAAACTCGCA GAAGTACTTC CGGAATTGAG TACCCAGCCA CATCTTGAAA TTTTAAAAGA AGTATTTAAA AGCGGTAATT CCTATACCGG TGAATCATCA CCATTTACAC TGATGGTGCA TGGAATTCCA AAGTCTTATA TTAAAAAGAT TATTTATAAA CCGCTGCGTG ATGCGTCAGG CAACATAGAA AGTATTTTAG GTATTGGGAT GGATGTGTCT GAAAAAATGG AAGCACAGGT TACCCTTGAA AAAAATCTGC AGCAGCTGGT CAGCTATTTT GAACAATCTC CTGTTGCTAT TGCTACCATC GATAAAGAAG GTTTAACATT CAGACTTGTA AATCCGTTTT ATGCTGAATT AGTAGGTCGA AAACCAGAAG ATCTCATTAA TAAGCCCTTG CTGGAAGCAT TGCCGGAGCT TAACGGTCAG GGTTTTGATA CCTTACTGGA AGGTGTTCTG CGTAGCAATG AACCTTATAG TGCCTTTGAA GTACGCGTTG AATTACTTCG GAGAGGCAAG CTTGAAACGG TATATGTAAA TCTTACTTAC CAGCCTCAGT ATGGTGTTGA CAATTTAGTT GTCGGCATTC TTGTAGTAGC GACTGATGTT ACGCAACAGG TACTGGCAAG AAAAAAAGTA GAAGAAAGCG AAGATAAATT ACGTACGATC GTAGCCAATG CACCGGCAGC CATCGCCATG TTTATTGGCC CAGACCTGAT CATTGAAAAT CCGAATCAAA CCTTTATTGA CGTTGCCGGA AAAGGGCCTG ATATTGCTGG CAAGCCGCTT GCTGAAACAT TTCCGGAATT ACAAAGGCAA CCTTTTTTAC AGATGCTGAA TGAAGTTTTC ACTACCGGAA AAACCATTCA GACACATGGC TCGCTGATTA AGATTATACA GAATGGTATT GAAGTAGAAA AATATTATGA TTTTACCTAT ACACCCATAT CCGATTCAGA CGGAAATGTA TATGCGATAC TCGACATTGC TATAGATGTT ACGGAACAGA TGATCGACCG GCATAGACTG GAAGAGAGTG AGCAACGGGT ACGCAGTATT ATAGAAAGTG CACCTTTCCC GATTGGTATA TATGTAGGCA GAGAGATGCG TATAAGTTTT ACAAACCAAA ATATTCTTGA TGTATGGGGG AAAGGGAATG ATGTAGTTGG AAAATTATAT TCCGAAGTAT TGCCGGAGCT GGCCAATCAG AATATCTATG AACAGCTGGA CCGTGTATAT ACAACCGGCA TTCCGTTTCA CGCGAAAAAT CAGCAGGTAG ATATTGTTGT CGATGACAGA TTACAGGCAT TCTATTTCAA TTATAGTTTT ACCCCCTTGT TTGATGGTGC AGGCAATGTA TATGGCGTAA TGAATACAGC CGCGGAAGTA ACAGATCTCA ACCTTGCCAA ACAACGTGTT GAGCAAAGTG AGCAGAACCT GCGCAATATG ATCTTACAGG CACCGGTTGC TATGTGTATC CTTTCAGGCC ATGACCATGT GATTGAAATT GCCAATGACT TCATGATCGA ACTGTGGGGA AAACCCAAAG CAGATATCAT AAACCGGCCG GTCTTCGACG CTTTGCCCGA TGCCCGCGGT CAGGGACTTG AAGCCATAAT GCGTGATGTA TATGAAAAAG GCATTACGTT TAAAGCAGAC GAAATGCCTG TACAGCTGAT CCGTAATGGT ACCCTCGAAA CAGTTTACCA GAATTTTGTT TACGAACCAT ATAGGGAAGA TTGCGGAAAA ATAATCGGTG TACTATGTGT TACCATAGAT GTTTCCGCAC AGGTACTTGC CCGGCTGAAG ATTGAAGAAA TCGTAAGTGC GCGTACACAG GAACTTGCCT CGACAAATGA TAAACTTCAA AAGTCAAATG CCGAACTTGC ACAGTTCGCA TACATTGCCT CACACGATTT ACAGGAGCCG CTCCGCAAGA TCAGTATGTT TACCCAATTG CTTGAAGGCA GGATCGGAAA CAATCTGGAT GAGCAGTCAA AAACACAGTT GAGTAAAATC AGCAAATCTG CCATACGCAT GAATACGCTG ATCAAAGATG TATTAAGCTA TTCAGAATTA ATAAAGGAAA CGGAAGAATT TACTTCGGTA GATCTTAATC AGGTAGTAGA AAATACACGC ATTGATTTTG AACTCCTGAT CGAACAAAAG AATGCATCGA TTCAATATCA AATGCTGCCT GTGATTGAAG CAATTCCATT GCAGATGGCT CAATTATTTG GAAACCTGAT CAGCAATGCG CTCAAGTTTG CCCGCACAGA TATAAAACCA GTGATTACCA TAGAATCTTC TTTATTATCA AAAGAAGAAA AAAAAGCTGC TGAACTAAAT CTGAAAACCG ACTACTATAA AATCACACTC AGCGATAATG GTATTGGTTT GAACCCGGAA AACACAGAAA AGATCTTTAA TATATTCCAG CGCCTGCACC GGAAATCAGA CTATGAAGGT ACAGGTATTG GCTTGGCTAT GTGTAAAAAA ATTGCACTCA ATCACAACGG AGATCTCAAT GCAACTGGCA GTACTGAAAA AGGAGCGGTG TTCAATATAA TTCTTCCCTT ACATAAACAG GCTGATGTAA ATAAATCAAA CTATTTTTCG GGTGTATCCT GA
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Protein sequence | MNITENNHTH YFLSGGGEMG ELTRSFDWSK TSIGTPDQWP HSLNTTLGII LHSSFPMFLF WGEELICFYN DAYRPSLGIN GKHPALGKKA KDVWPDIWDF IAPLIKQVLE TNEAVWYEDQ LLPIYRNGQM EDVYWTFSYS PAYGDDGKVS GVFVTCTETT NKVKNQKRLE ESEEKFRTLI EEIPVSTCVL KGKDMVIDLA NEMAIQTWGK GPDIIGRKLA EVLPELSTQP HLEILKEVFK SGNSYTGESS PFTLMVHGIP KSYIKKIIYK PLRDASGNIE SILGIGMDVS EKMEAQVTLE KNLQQLVSYF EQSPVAIATI DKEGLTFRLV NPFYAELVGR KPEDLINKPL LEALPELNGQ GFDTLLEGVL RSNEPYSAFE VRVELLRRGK LETVYVNLTY QPQYGVDNLV VGILVVATDV TQQVLARKKV EESEDKLRTI VANAPAAIAM FIGPDLIIEN PNQTFIDVAG KGPDIAGKPL AETFPELQRQ PFLQMLNEVF TTGKTIQTHG SLIKIIQNGI EVEKYYDFTY TPISDSDGNV YAILDIAIDV TEQMIDRHRL EESEQRVRSI IESAPFPIGI YVGREMRISF TNQNILDVWG KGNDVVGKLY SEVLPELANQ NIYEQLDRVY TTGIPFHAKN QQVDIVVDDR LQAFYFNYSF TPLFDGAGNV YGVMNTAAEV TDLNLAKQRV EQSEQNLRNM ILQAPVAMCI LSGHDHVIEI ANDFMIELWG KPKADIINRP VFDALPDARG QGLEAIMRDV YEKGITFKAD EMPVQLIRNG TLETVYQNFV YEPYREDCGK IIGVLCVTID VSAQVLARLK IEEIVSARTQ ELASTNDKLQ KSNAELAQFA YIASHDLQEP LRKISMFTQL LEGRIGNNLD EQSKTQLSKI SKSAIRMNTL IKDVLSYSEL IKETEEFTSV DLNQVVENTR IDFELLIEQK NASIQYQMLP VIEAIPLQMA QLFGNLISNA LKFARTDIKP VITIESSLLS KEEKKAAELN LKTDYYKITL SDNGIGLNPE NTEKIFNIFQ RLHRKSDYEG TGIGLAMCKK IALNHNGDLN ATGSTEKGAV FNIILPLHKQ ADVNKSNYFS GVS
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