Gene CHU_1663 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_1663 
SymbolrcsC 
ID4186524 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp1949384 
End bp1952665 
Gene Length3282 bp 
Protein Length1093 aa 
Translation table11 
GC content42% 
IMG OID638071657 
Productsensor for ctr capsule biosynthesis, histidine kinase acting on RcsB 
Protein accessionYP_678273 
Protein GI110638064 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.749752 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.503363 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATTA CCGAAAATAA CCACACACAT TATTTCCTTT CCGGCGGCGG AGAGATGGGA 
GAGCTGACCC GCTCGTTCGA CTGGTCAAAA ACATCCATCG GAACACCCGA CCAATGGCCG
CACAGTTTAA ACACCACGCT CGGTATTATT CTGCACTCCT CCTTTCCGAT GTTTCTGTTC
TGGGGAGAAG AACTGATCTG TTTTTACAAC GATGCGTACC GGCCAAGCCT GGGGATCAAT
GGGAAACACC CGGCACTGGG CAAAAAAGCA AAGGATGTAT GGCCGGATAT CTGGGATTTC
ATAGCCCCGC TCATTAAACA GGTATTGGAG ACCAACGAAG CCGTATGGTA TGAAGATCAG
CTGCTGCCCA TCTACCGTAA TGGACAGATG GAAGACGTAT ACTGGACCTT CAGCTACAGC
CCGGCATATG GCGATGATGG AAAAGTAAGC GGCGTATTTG TTACCTGTAC CGAAACAACA
AACAAAGTAA AAAATCAAAA AAGGCTGGAA GAAAGTGAAG AAAAATTCCG CACACTGATT
GAAGAAATTC CTGTATCTAC CTGTGTACTG AAAGGTAAAG ATATGGTGAT AGACCTTGCC
AATGAAATGG CAATACAAAC CTGGGGCAAA GGTCCGGATA TCATTGGCAG GAAACTCGCA
GAAGTACTTC CGGAATTGAG TACCCAGCCA CATCTTGAAA TTTTAAAAGA AGTATTTAAA
AGCGGTAATT CCTATACCGG TGAATCATCA CCATTTACAC TGATGGTGCA TGGAATTCCA
AAGTCTTATA TTAAAAAGAT TATTTATAAA CCGCTGCGTG ATGCGTCAGG CAACATAGAA
AGTATTTTAG GTATTGGGAT GGATGTGTCT GAAAAAATGG AAGCACAGGT TACCCTTGAA
AAAAATCTGC AGCAGCTGGT CAGCTATTTT GAACAATCTC CTGTTGCTAT TGCTACCATC
GATAAAGAAG GTTTAACATT CAGACTTGTA AATCCGTTTT ATGCTGAATT AGTAGGTCGA
AAACCAGAAG ATCTCATTAA TAAGCCCTTG CTGGAAGCAT TGCCGGAGCT TAACGGTCAG
GGTTTTGATA CCTTACTGGA AGGTGTTCTG CGTAGCAATG AACCTTATAG TGCCTTTGAA
GTACGCGTTG AATTACTTCG GAGAGGCAAG CTTGAAACGG TATATGTAAA TCTTACTTAC
CAGCCTCAGT ATGGTGTTGA CAATTTAGTT GTCGGCATTC TTGTAGTAGC GACTGATGTT
ACGCAACAGG TACTGGCAAG AAAAAAAGTA GAAGAAAGCG AAGATAAATT ACGTACGATC
GTAGCCAATG CACCGGCAGC CATCGCCATG TTTATTGGCC CAGACCTGAT CATTGAAAAT
CCGAATCAAA CCTTTATTGA CGTTGCCGGA AAAGGGCCTG ATATTGCTGG CAAGCCGCTT
GCTGAAACAT TTCCGGAATT ACAAAGGCAA CCTTTTTTAC AGATGCTGAA TGAAGTTTTC
ACTACCGGAA AAACCATTCA GACACATGGC TCGCTGATTA AGATTATACA GAATGGTATT
GAAGTAGAAA AATATTATGA TTTTACCTAT ACACCCATAT CCGATTCAGA CGGAAATGTA
TATGCGATAC TCGACATTGC TATAGATGTT ACGGAACAGA TGATCGACCG GCATAGACTG
GAAGAGAGTG AGCAACGGGT ACGCAGTATT ATAGAAAGTG CACCTTTCCC GATTGGTATA
TATGTAGGCA GAGAGATGCG TATAAGTTTT ACAAACCAAA ATATTCTTGA TGTATGGGGG
AAAGGGAATG ATGTAGTTGG AAAATTATAT TCCGAAGTAT TGCCGGAGCT GGCCAATCAG
AATATCTATG AACAGCTGGA CCGTGTATAT ACAACCGGCA TTCCGTTTCA CGCGAAAAAT
CAGCAGGTAG ATATTGTTGT CGATGACAGA TTACAGGCAT TCTATTTCAA TTATAGTTTT
ACCCCCTTGT TTGATGGTGC AGGCAATGTA TATGGCGTAA TGAATACAGC CGCGGAAGTA
ACAGATCTCA ACCTTGCCAA ACAACGTGTT GAGCAAAGTG AGCAGAACCT GCGCAATATG
ATCTTACAGG CACCGGTTGC TATGTGTATC CTTTCAGGCC ATGACCATGT GATTGAAATT
GCCAATGACT TCATGATCGA ACTGTGGGGA AAACCCAAAG CAGATATCAT AAACCGGCCG
GTCTTCGACG CTTTGCCCGA TGCCCGCGGT CAGGGACTTG AAGCCATAAT GCGTGATGTA
TATGAAAAAG GCATTACGTT TAAAGCAGAC GAAATGCCTG TACAGCTGAT CCGTAATGGT
ACCCTCGAAA CAGTTTACCA GAATTTTGTT TACGAACCAT ATAGGGAAGA TTGCGGAAAA
ATAATCGGTG TACTATGTGT TACCATAGAT GTTTCCGCAC AGGTACTTGC CCGGCTGAAG
ATTGAAGAAA TCGTAAGTGC GCGTACACAG GAACTTGCCT CGACAAATGA TAAACTTCAA
AAGTCAAATG CCGAACTTGC ACAGTTCGCA TACATTGCCT CACACGATTT ACAGGAGCCG
CTCCGCAAGA TCAGTATGTT TACCCAATTG CTTGAAGGCA GGATCGGAAA CAATCTGGAT
GAGCAGTCAA AAACACAGTT GAGTAAAATC AGCAAATCTG CCATACGCAT GAATACGCTG
ATCAAAGATG TATTAAGCTA TTCAGAATTA ATAAAGGAAA CGGAAGAATT TACTTCGGTA
GATCTTAATC AGGTAGTAGA AAATACACGC ATTGATTTTG AACTCCTGAT CGAACAAAAG
AATGCATCGA TTCAATATCA AATGCTGCCT GTGATTGAAG CAATTCCATT GCAGATGGCT
CAATTATTTG GAAACCTGAT CAGCAATGCG CTCAAGTTTG CCCGCACAGA TATAAAACCA
GTGATTACCA TAGAATCTTC TTTATTATCA AAAGAAGAAA AAAAAGCTGC TGAACTAAAT
CTGAAAACCG ACTACTATAA AATCACACTC AGCGATAATG GTATTGGTTT GAACCCGGAA
AACACAGAAA AGATCTTTAA TATATTCCAG CGCCTGCACC GGAAATCAGA CTATGAAGGT
ACAGGTATTG GCTTGGCTAT GTGTAAAAAA ATTGCACTCA ATCACAACGG AGATCTCAAT
GCAACTGGCA GTACTGAAAA AGGAGCGGTG TTCAATATAA TTCTTCCCTT ACATAAACAG
GCTGATGTAA ATAAATCAAA CTATTTTTCG GGTGTATCCT GA
 
Protein sequence
MNITENNHTH YFLSGGGEMG ELTRSFDWSK TSIGTPDQWP HSLNTTLGII LHSSFPMFLF 
WGEELICFYN DAYRPSLGIN GKHPALGKKA KDVWPDIWDF IAPLIKQVLE TNEAVWYEDQ
LLPIYRNGQM EDVYWTFSYS PAYGDDGKVS GVFVTCTETT NKVKNQKRLE ESEEKFRTLI
EEIPVSTCVL KGKDMVIDLA NEMAIQTWGK GPDIIGRKLA EVLPELSTQP HLEILKEVFK
SGNSYTGESS PFTLMVHGIP KSYIKKIIYK PLRDASGNIE SILGIGMDVS EKMEAQVTLE
KNLQQLVSYF EQSPVAIATI DKEGLTFRLV NPFYAELVGR KPEDLINKPL LEALPELNGQ
GFDTLLEGVL RSNEPYSAFE VRVELLRRGK LETVYVNLTY QPQYGVDNLV VGILVVATDV
TQQVLARKKV EESEDKLRTI VANAPAAIAM FIGPDLIIEN PNQTFIDVAG KGPDIAGKPL
AETFPELQRQ PFLQMLNEVF TTGKTIQTHG SLIKIIQNGI EVEKYYDFTY TPISDSDGNV
YAILDIAIDV TEQMIDRHRL EESEQRVRSI IESAPFPIGI YVGREMRISF TNQNILDVWG
KGNDVVGKLY SEVLPELANQ NIYEQLDRVY TTGIPFHAKN QQVDIVVDDR LQAFYFNYSF
TPLFDGAGNV YGVMNTAAEV TDLNLAKQRV EQSEQNLRNM ILQAPVAMCI LSGHDHVIEI
ANDFMIELWG KPKADIINRP VFDALPDARG QGLEAIMRDV YEKGITFKAD EMPVQLIRNG
TLETVYQNFV YEPYREDCGK IIGVLCVTID VSAQVLARLK IEEIVSARTQ ELASTNDKLQ
KSNAELAQFA YIASHDLQEP LRKISMFTQL LEGRIGNNLD EQSKTQLSKI SKSAIRMNTL
IKDVLSYSEL IKETEEFTSV DLNQVVENTR IDFELLIEQK NASIQYQMLP VIEAIPLQMA
QLFGNLISNA LKFARTDIKP VITIESSLLS KEEKKAAELN LKTDYYKITL SDNGIGLNPE
NTEKIFNIFQ RLHRKSDYEG TGIGLAMCKK IALNHNGDLN ATGSTEKGAV FNIILPLHKQ
ADVNKSNYFS GVS