Gene CHU_1626 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_1626 
Symbol 
ID4187003 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp1903402 
End bp1903971 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content32% 
IMG OID638071619 
Producthypothetical protein 
Protein accessionYP_678236 
Protein GI110638028 
COG category[R] General function prediction only 
COG ID[COG1399] Predicted metal-binding, possibly nucleic acid-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.0411275 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00685696 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAAAAGA ATAGGTTAAG AGATTTTGAT ATTGAGATAT CACATGTCAA GGAACACACA 
CCGCACAAGT TTGAGTTCCA GCTTAATGAT TCTTTTTTTA CGTTATTTGA AGATAGTCTG
ATCCAGAAGG GATCAGTAAC GGTTGATGTA GAATTTGAGA AAACGCCCCT GCTTATTCGA
ATGAATTTCA TATTAAATGG AGTTGTTGAA TTGGTTTGTG ATCGTTCTTT AGATACCTTT
GAGCAACCTA TTTCATCTGA AAACGTTCTT TTATTCAAAT ATTCTGAAGA AGAAGGCGAA
ATAACAGAAG AGATTATTGG CATTAAAAGA GAAACCATCA AAATTAATAT CGCTCAGTAT
ATTTATGAGT TTATTAATTT AGAAGTACCC ATAAAAAAAC TTCATCCCCG TTTTCAGGAA
GAAGAAGTCG ATAATGATAC ATCAGAAACA TTATTGATTT ATTCTACAGA AACGGAAAAT
GAAGAAAAGA GTGAATCACC TACTGAAGAT TTAATTGATC CGAGGTGGCT GGCACTAAAG
AGTTTAAAAG ATAAAAGTAA GTTAAACTAG
 
Protein sequence
MQKNRLRDFD IEISHVKEHT PHKFEFQLND SFFTLFEDSL IQKGSVTVDV EFEKTPLLIR 
MNFILNGVVE LVCDRSLDTF EQPISSENVL LFKYSEEEGE ITEEIIGIKR ETIKINIAQY
IYEFINLEVP IKKLHPRFQE EEVDNDTSET LLIYSTETEN EEKSESPTED LIDPRWLALK
SLKDKSKLN