Gene CHU_1621 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_1621 
Symbol 
ID4187096 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand- 
Start bp1898512 
End bp1899210 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content37% 
IMG OID638071613 
Producthypothetical protein 
Protein accessionYP_678230 
Protein GI110638023 
COG category[S] Function unknown 
COG ID[COG4420] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.0139692 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones5 
Fosmid unclonability p-value0.0181872 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAAAG TAACGTGTCA TATTACAAAA AAAGAATTTG ATAAAAGTAA TTGCCACAAG 
GCTGATTTTA TCCGTCCTTC CTTATTTGAG TTGATTCAGA AAGATTATCC GGATCTCACT 
CCCAGCTCTT ATATTTCGCT TGATGTGCTG GATAAATACC GTAAAACATA TCTGGAAGGC 
ATCATTAACA AAGAGAACAG AGAACTTTCA AGCCTCGAGA ATGAAGTAGT AGAATCAATC 
ACGCACAATC AGATTCTTTC AGATAACATT GAGCCTGACC TCAATGATAG CCTGACCTTT 
GGACAACGTG TGGCAGATTC CATCGCCGAG TTTGGTGGCA GCTGGACATT TATAATTTCC 
TTCTTCTCCT TCCTGATTGT ATGGATGCTG ATCAATATTT TCTGGTTGGC ACAAACTGCT 
TTTGATCCGT ATCCGTTTAT TTTATTGAAT TTACTTTTAT CCTGCCTTGC TGCTATTCAG 
GCACCTATCA TTATGATGAG TCAAAACAGA CGGGAGCAGA AAGATCGTAT CCGGAATGAA 
TATGAATACA AAATAAACCT CAAAGCTGAA CTGGAAATTA AATTGCTTCA TGAAAAACTG 
GATCATTTAA TGATTCATCA GAACAGACGT TTGCTTGAGA TTCAGGAAAT TCAGGTAGAT 
ATTTTAGAAG ACATCATGAA GGAAATTAAA ACAAAATGA
 
Protein sequence
MEKVTCHITK KEFDKSNCHK ADFIRPSLFE LIQKDYPDLT PSSYISLDVL DKYRKTYLEG 
IINKENRELS SLENEVVESI THNQILSDNI EPDLNDSLTF GQRVADSIAE FGGSWTFIIS 
FFSFLIVWML INIFWLAQTA FDPYPFILLN LLLSCLAAIQ APIIMMSQNR REQKDRIRNE 
YEYKINLKAE LEIKLLHEKL DHLMIHQNRR LLEIQEIQVD ILEDIMKEIK TK