Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1616 |
Symbol | fecI |
ID | 4187092 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 1896510 |
End bp | 1897064 |
Gene Length | 555 bp |
Protein Length | 184 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 638071609 |
Product | RNA polymerase sigma factor |
Protein accession | YP_678226 |
Protein GI | 110638019 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.0618359 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0178191 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAATA GTCAGGAAGC ACACATAGAA CAGGTTTTTA AAAACCAACG CGGAGGCCTG TTAGGTTTTA TCCGCAAGCG TGTATCCCGG CTGGAAGACG CAGAAGATAT TCTGCAGGAT GTATTCTTTC AATTTGTTTC TGCTTATGAT AGCATTGAAT CAATTGATAA AGTTAGTTCA TGGTTATTTT CTGTTGCGCG TAACAAAATA ACCGATCGCT ATCGGAAGAA GAAGCCTGAA GCATGGTCTG ATCTGGGATT TCAGGGGAAA AATGAAGATT CGGAAATGTT GATGCTGGAA GATATTCTTC CGGATTTTAA AAATACTCCG GAAGATGTTT ATGCACGCAA CGTAATCTGG GAAGCAATAG AGGTAGCCAT GGCTGAAATG CCGGCAGAAC AAAGACAGGT AATGTTATTA CATGAATTTG AAGATAAGTC GTTTAAAGAA ATAAGTGAAA TTACAGGTGT TAGTGTAAAT ACACTGCTGT CAAGAAAACG GTATGCAATC TTAACACTTA GAAAAAAATT ACAGGAATTG TATGATGAAT TATAG
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Protein sequence | MANSQEAHIE QVFKNQRGGL LGFIRKRVSR LEDAEDILQD VFFQFVSAYD SIESIDKVSS WLFSVARNKI TDRYRKKKPE AWSDLGFQGK NEDSEMLMLE DILPDFKNTP EDVYARNVIW EAIEVAMAEM PAEQRQVMLL HEFEDKSFKE ISEITGVSVN TLLSRKRYAI LTLRKKLQEL YDEL
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