| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1598 |
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| Symbol | deaD |
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| ID | 4185180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 1872033 |
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| End bp | 1873775 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638071591 |
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| Product | ATP-dependent RNA helicase (cold-shock DEAD-box protein A) |
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| Protein accession | YP_678208 |
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| Protein GI | 110638001 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.602418 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTATTTA AAGACCTTGG ATTGTCTCCT GAAGTTGTGG AGGCTATCGA ATCTATTGGC
TATTCTGAAG CCACGCCTAT TCAGGAAAAA ACAATTCCAA TTTTAATGAC AGGAAAAGAC
CTTACAGGTC AGGCACAAAC GGGTACTGGT AAAACAGCTG CCTTTGGTAT TCCTGCTATT
GAACATGTTG ATATTTCTAT CAACCAAACA CAATCCTTAA TTCTTTGTCC TACACGTGAA
CTTGCTTTAC AGGTATGTAC GGAATTAAAA AAACTTTCTA AATTCAAAAA AGGTCTTCGT
GTACTTGCAG TATACGGTGG CGAATCGATT GAAAGACAAA TCCGCGATCT GAAAGCGGGT
GCGCATATCG TTGTAGGTAC ACCTGGCCGT ATCATTGATC ACCTGGACAG ACGTACATTG
AATGCTTCTC ACCTTTCTCA GATCATCTTA GATGAAGCGG ATGAAATGCT GAACATGGGT
TTCAGAGAAG ACATCGAATT AATCTTAACC CGTTTACCAG AAGAACGTCA GACTGTATTA
TTTTCTGCAA CGCTTGCTCC TCCTATCCTG GCGCTTGCTA AACGTTTCCA GAATAATCCG
GAGATCATTA AAATTGAAAG AAAAGAATTA ACGATCAGCA CGGTTGAACA ATTCTATTAC
TTAGTTAAAA ACTCTCAAAA AACAGAAATT GTTACACAAA TCATTGACCT GAACAATCTT
CAGTTGATGT TGATCTTCTG TAATACAAAA AGAAAAGTTG AAGAAGTTAC CGATGAATTA
AAAGCATACG GACACAATCC GATCAGCTTA CACGGTGATA AAACACAACG CGACAGAACA
GAAGTAATGA GCAAATTCCG TAAGGGATTA GCCAATATCC TTGTTGCTAC AGATGTTGCG
GCACGTGGTA TTGACGTTAC AGGTGTTGAT GCGGTTATCA ACTACGATGT TCCATTGGAT
ATTGAAAACT ACGTTCACCG TATCGGCAGA ACAGGTAGAG CAGGTCAGTT AGGTAAATCA
TTCACATTGG TAACAAGTGA TGAGAAATAT AAATTGAGAG ACATCGAACG TTATACAAAG
GCAACAATTG AAAAAGCTGA AACGCCTACA CGTCAGGAAT TAGTTGCTTA TAAAAAAGAT
AAATTAGCTA CACGTATTAC TACTGAATTA GAAAAACCAA ACATTAAAAT CTGGTCTGAT
TTATTAGAAG AATATAAAGA AAAAGGTATT ACTGCTGATC AGATTGCAAT TGCGTTGCTT
TCTAAAGAAA TGAAAGATCT TGCAGAACCT GAACGCAGAG TATTTGAAGA CCGTGGCGAT
CGTCGTGATC GCGGCGACAG AGGTGACCGT GGCGGTCGTT TCGATCGTGG TGACAGAAGA
GATGGACCTC GCAGAGATGG CCGTTCTTCA GACCGTTTCG GAGACAGACC AGCTGCTTCA
AGAGACCGTG ATGGTGGTGA AAGACGTGAA AGAACGCCGA GACCAAGAAC AAGTGATGCA
AGTATGGCAC GTTTATTCGT AAACGTTGGA CGTATTGACC GCATCTCTCC TGGTGATATC
GTTGGTGCAT TTGCCGGTGA GGCAAACATC AAAGGTTCTC AGATCGGACA GATCGATATC
TTCGATAAAT ATTCATTCGT GGAACTTCCA CATGACTTAG TTGATCAGGT TATGGACGGA
ATGAGAAACA ATAAAATTAA AGGAAAATCA ATCAACATCG AAATTTCGAA CGGTAAGCAA
TAA
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| Protein sequence | MLFKDLGLSP EVVEAIESIG YSEATPIQEK TIPILMTGKD LTGQAQTGTG KTAAFGIPAI
EHVDISINQT QSLILCPTRE LALQVCTELK KLSKFKKGLR VLAVYGGESI ERQIRDLKAG
AHIVVGTPGR IIDHLDRRTL NASHLSQIIL DEADEMLNMG FREDIELILT RLPEERQTVL
FSATLAPPIL ALAKRFQNNP EIIKIERKEL TISTVEQFYY LVKNSQKTEI VTQIIDLNNL
QLMLIFCNTK RKVEEVTDEL KAYGHNPISL HGDKTQRDRT EVMSKFRKGL ANILVATDVA
ARGIDVTGVD AVINYDVPLD IENYVHRIGR TGRAGQLGKS FTLVTSDEKY KLRDIERYTK
ATIEKAETPT RQELVAYKKD KLATRITTEL EKPNIKIWSD LLEEYKEKGI TADQIAIALL
SKEMKDLAEP ERRVFEDRGD RRDRGDRGDR GGRFDRGDRR DGPRRDGRSS DRFGDRPAAS
RDRDGGERRE RTPRPRTSDA SMARLFVNVG RIDRISPGDI VGAFAGEANI KGSQIGQIDI
FDKYSFVELP HDLVDQVMDG MRNNKIKGKS INIEISNGKQ
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