| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1592 |
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| Symbol | smc |
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| ID | 4185174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 1864816 |
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| End bp | 1868352 |
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| Gene Length | 3537 bp |
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| Protein Length | 1178 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 638071585 |
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| Product | chromosome segregation protein, Smc family protein |
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| Protein accession | YP_678202 |
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| Protein GI | 110637995 |
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| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
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| COG ID | [COG1196] Chromosome segregation ATPases |
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| TIGRFAM ID | [TIGR02168] chromosome segregation protein SMC, common bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00176998 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.493606 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATTAA GTAAGTTAGA GATTAAAGGA TTTAAGAGTT TTGGTGATAA AGTAGTCATA
AATTTTGACG AAGGTATTAC TGGTATTGTA GGTCCAAATG GCTGCGGAAA ATCAAACGTT
GTAGATGCGA TACGTTGGGT ATTGGGTGAA CAGAAAACAC GTGCCCTACG TTCGGACAAA
ATGGAGAACG TTATTTTTAA CGGCACAAAA AACCGTAAGC CACAGCAAAT GGCAGAAGTT
TCGTTATCTT TTAACAATAC AAAAAATTTA TTACCGACTG AATATTCTCA GGTTACAATC
ACACGCCGTT ACTACCGTAC AGGCGACAGT GAATATTTAT TGAACGGTGT TACCTGTCGG
TTGAAAGATA TCAATGACTT GTTTCTGGAT ACAGGTATCG GTTCTGATTC GTATGCAATC
ATTGAATTGA AAATGGTTGA TGATATTTTG AACGATAAAG ACGGATCGCG CCGTGAATTG
TTTGAAGAAG CAGCGGGGAT CTCTAAATTC AAAATGCGTA AAAAACAAAC GCTTAAGAAA
TTAGAAGAAA CAGATAAAGA TCTTGAACGC GTTGAAGATT TACTTTTTGA GATTAACAAA
AATCTTAAAT CGCTTGAGAA GCAAGCCAAA CAGACTGAAA AATATCATGA GATAAAAGAA
GATTATAAAA ATGCGAGTAT TGATCTGGCT AAAGTAAGTG TACATTCTCA ACATGAGGAA
ATACAAGCTT TAAACAAGAC GTTAGATGAA AAAACAGACT TGCGCACGCA ATACAATTCA
CAGATCAATG AAAAAGAAAG TGATGTTGAG CGTGTAAAAC TGGAGATGGT TAATAAAGAA
AAATTATTAG CTGACAGGCA AAAAACGTTG AACGAACATG TGAATTTGAT CCGTACGTTT
GAAAGTGATA AAAAAATTAA AAACGAACGT CTGCGTTTCT TAAATGACAA AAGCAAATCA
TTAACCGATC AGATTGAATT AGATAAGCAA AGCAATGACC GTGCGGCATT CAGCCTGGAT
AGCTTAACAA AAGAAAAAGA ATCAGCAGAG AAAATATTTG AAGAAATTTC GTTAAAAGTT
GAAAAATTAA AGCAGGAATA CGAAGAGCAA AAAGAAAAAA ACAAGCTTTT ACAGGAAGAA
GTAGGAACAG CTTCCAGTGC ATTTAAATTA AAGCAGGAAC AGGTTTATCA GATCAACAAA
CAGCTCGAAA TTTATGCCAT TCAGCTTTCA TCTTTAAAAC AGGAATTAGA AAAAACAACA
AGTGATACAT CTGCGCATTC TGCTAACCTT TCAGAATTTG AAAGCAAAGC AAATGAAGTA
AAGCGTACAC TAGATACAAA AAATGCGGAG CTTGAAACCC TCCAAGCTGA AGATGAGCGT
ATTCAGCAGC AGGTGATCAA TCTTGAAAAA GAGATTGAAC AGATCCGTGA ACAATTGACG
CAGGCAAACA GAAAGCTTGA TTCAAAGCAA AACGAATTCA ACTTAACCAA ATCAATGGTT
GAGAACCTGG AAGGTTTCCC GGAAGCAATC AAATTCTTAA AGAAGAATGC GTCGTGGGGT
AAGGACACTC CGCTCCTTTC GGATATTCTT ACCTGTGACG AAAAATTCAG ACTGTGTATA
GAGAACTACC TGGAGTCGTT CATGAATTAC TATGTGGTAG AGAACGAAGC ACAGGCAATT
CAGGCAGTAA ACCTATTAAG TGATTCAGCA AAAGGCAAAG CAAACTTCTT TGTTTTAACC
CGTTTCAATA ACTATACATC ATCACAAAAA AATACGTTTG GCGACTGCGT ATCTGCCCTG
GATATTGTTG AATACGATAA CAAATACAAA GGTTTGATTC AATATATTCT GGATGGTGTA
TACATTATTA CAGGTAATCA GGATATTATT CCGGAAGATC CGCAATCGGT CTTTATTACA
CAGAATGGTA AGTTAGCAAA ACGCAAATAC AGTATTTCCG GTGGTTCAGT AGGATTGTTT
GAAGGGAAAC GTATCGGCCG TGCCAAGAAC ATGGAAAAGC TTGAAGCAGA TATCAAGCAG
ATCACCAGTG ATATTGAAAA CATTCGTGTT GTACTTGATA CGAAATTAAA AGAGTTTTAT
TTATTAAAAG AGAATACGAA AAAATTAGAA GTTGAAGAAC TTCGCCGTGA GATCAATTTA
GTAAACAACG AGTACATTAC GCTGAAAACA AAACAGGAAC AGCTGGCTTC CATGCTTTCT
GATAATAGTT TGCGCAGAGA AGATGTATTG GAAAAGATCG CTAAAATTGA AGAAGACATT
AATATCAATA CGCCTCTTGC CAAAGAAGGT AAAGATGAAC TTGAAAGTCT GGAAGAAAGA
CTGAATCAGT TGAATGATGA TTTCAGCTTA CAGACAACGC AGTTAAGCAA CAAATCTGCT
GTATACAATC AGGAGAATAT TGGTTTCCAT CAGCAGCAAA ACCGTGTAAA CAGTTTAGAG
CAGGAAATTG GTTACAAACA AACAACGTTT GATCAAAGCA AAGAACGTAT TGCTAAAAAC
TTAGAAGAAC TGGAAATAGC AAATGGTGAG ATCCGCCAGA TGGTTGACAG TGCTGATGTG
AGCGAAGATG AACTCATCTC TTTCTACAAA GAAAAAGAAT CGATCGAACA AGGTGTGCAT
GAAGCTGAAA AAGATTATTA CAGCACACGG GTACGTATTG ATGAAGTAGA AAAAGAAGTT
AAGGAAATCA GACGTAACCG TGAAGAATGT GATGAAATAC TTGTTACGCT TCAGAACCGT
GTTACGGAAA CAAAAATTGG TTTAAGTTCC ATCAAAGAGC GTTTGAATGT AGAGTTTAAT
TTAAACTTAG ACGACATTTT AGCGAATCAG AATCCGGATG ATGTATTACC ATCCGAAGAA
GAACTGAAAG AAAAAGTTAT TAAAATTAAA AACAGCTTAG ACCGCCTTGG GCCAATCAAC
CCCATGGCAA TGGAAGCATA CCAGGAGATC AAAGAACGCC ACGTGTTTAT TACAACACAA
AAAGAAGATC TGGCAAAATC AAAAGAATCA TTAATGGAAA CCATTAATGA GATTGATACC
GTTGCTAAGG CGACCTTCCT GGATGCGTTT GAAAAAATCC GCGATAACTT TATCCGGGTG
TTCCGTTCGC TGTTTACAGA TGAAGATAGT TGTGATCTGA AATTGGTTGA TCCGGAAAAT
CCATTAGATT CAGCGATTGA TATTATGGCA AAACCAAAAG GTAAGCGTCC GTTAACAATC
AATCAATTAT CCGGAGGAGA AAAAACGCTT ACTGCAATCT CTCTTCTGTT TGCGATCTAC
TTAATCAAGC CGGCACCATT CTGTATCTTC GATGAGGTTG ATGCACCGTT AGATGATGCC
AACATTGATA AATTCAATAA TATCATCCGT CAGTTTGCGG GTGAATCACA ATTCATTATT
GTAACGCACA ACAAACGTAC GATGGCTAGT ACTGATATTA TCTACGGTAT CACGATGGTA
GAGCAAGGTG TATCCAGATT GGTACCTGTA GACTTACGTT CGTTAAATGA AGCCTAA
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| Protein sequence | MQLSKLEIKG FKSFGDKVVI NFDEGITGIV GPNGCGKSNV VDAIRWVLGE QKTRALRSDK
MENVIFNGTK NRKPQQMAEV SLSFNNTKNL LPTEYSQVTI TRRYYRTGDS EYLLNGVTCR
LKDINDLFLD TGIGSDSYAI IELKMVDDIL NDKDGSRREL FEEAAGISKF KMRKKQTLKK
LEETDKDLER VEDLLFEINK NLKSLEKQAK QTEKYHEIKE DYKNASIDLA KVSVHSQHEE
IQALNKTLDE KTDLRTQYNS QINEKESDVE RVKLEMVNKE KLLADRQKTL NEHVNLIRTF
ESDKKIKNER LRFLNDKSKS LTDQIELDKQ SNDRAAFSLD SLTKEKESAE KIFEEISLKV
EKLKQEYEEQ KEKNKLLQEE VGTASSAFKL KQEQVYQINK QLEIYAIQLS SLKQELEKTT
SDTSAHSANL SEFESKANEV KRTLDTKNAE LETLQAEDER IQQQVINLEK EIEQIREQLT
QANRKLDSKQ NEFNLTKSMV ENLEGFPEAI KFLKKNASWG KDTPLLSDIL TCDEKFRLCI
ENYLESFMNY YVVENEAQAI QAVNLLSDSA KGKANFFVLT RFNNYTSSQK NTFGDCVSAL
DIVEYDNKYK GLIQYILDGV YIITGNQDII PEDPQSVFIT QNGKLAKRKY SISGGSVGLF
EGKRIGRAKN MEKLEADIKQ ITSDIENIRV VLDTKLKEFY LLKENTKKLE VEELRREINL
VNNEYITLKT KQEQLASMLS DNSLRREDVL EKIAKIEEDI NINTPLAKEG KDELESLEER
LNQLNDDFSL QTTQLSNKSA VYNQENIGFH QQQNRVNSLE QEIGYKQTTF DQSKERIAKN
LEELEIANGE IRQMVDSADV SEDELISFYK EKESIEQGVH EAEKDYYSTR VRIDEVEKEV
KEIRRNREEC DEILVTLQNR VTETKIGLSS IKERLNVEFN LNLDDILANQ NPDDVLPSEE
ELKEKVIKIK NSLDRLGPIN PMAMEAYQEI KERHVFITTQ KEDLAKSKES LMETINEIDT
VAKATFLDAF EKIRDNFIRV FRSLFTDEDS CDLKLVDPEN PLDSAIDIMA KPKGKRPLTI
NQLSGGEKTL TAISLLFAIY LIKPAPFCIF DEVDAPLDDA NIDKFNNIIR QFAGESQFII
VTHNKRTMAS TDIIYGITMV EQGVSRLVPV DLRSLNEA
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