Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1572 |
Symbol | |
ID | 4185606 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 1846349 |
End bp | 1847566 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 638071566 |
Product | ABC transporter, permease |
Protein accession | YP_678183 |
Protein GI | 110637976 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.00402772 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.231871 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAATCTTT ATTACTTTAT ATCGTCAAGA ATACAAAAAA ATGATCGGCA GTCATTTTCG TCCCTCGTTC ACAGGATCGC TGTCATCATT ATTTTTCTTG GTTTTTTATT ATCGGTTACT TCGTTGTGTA TACTGGATGG TTTTAAAACC AGTATCCGTC AAAAGATTTT CAGTTTTGGA GCACACATTC ATTTAACCAA ATATGATCTG GATAAATCGT ATGAGGAGTC GCCGTTTATT ATTAATACCG GCACACTTGA TTCCATTAAA GCCATTCCTA ACATAGAACA CGTTCAGGGT GTTTCGCATA AACCCTGTCT GTTAAAGTCT TCCTCTGAAA TTCAAGGTGT GATCTTAAAA GGTGTTGGGC CTGATTTTGA TATTGATCGT TTTAAAAGCA ATATGCTGGA AGGCCGGTTT ATTACGTTTA ACGATAGCGG TTATTCCAAA CAGATTGTTA TAAGTGAAAA AATTGCACAC AAGCTTAATT TAAAAACCGG CGACAGTCTT TTACTGTATT TTGTGCAGAA TCCGCCGCGA TACAGGAAGG TAAGCATTTC AGGTATTTAC AAGACAGGTC TGGAAGAACT GGATGAATTA TTTATCATCG GTGATATACA ACTAAACAGA GTATTGAGCG CCTGGTCTCC GAAGCAGATA GGCGGTCTTG AAATTTATGT ATCCGATTTT AATATGCTTG ATTCCACTGC AAGTGAAGTA TACAAGCGTA TGGAGTATGA TATGCAGATT CAGCTGATAA CAGATAAGTA TCTGCAGATT TTTGATTGGC TCAATCTGCT AAACAGAAAC GTTACAATCT TTTTAGCACT CATTATGGGT GTTTCTATTT TTGTAATTAT CTCCACCATC ATTGTCATGA TCATGGAACG TACCTCTATG GTTGGTCTGC TTAAAGCATT CGGAACCACG AACAGTGATG TGAGTAAAAT ATTCCTGTGG AATGGATTTA AAATTATTAT TATCGGAATG CTTGGCGGGA ATGTGGTTGC GTTGACCTTA TGTGCGCTGC AATACTATAC CGGCATTGTG CCCTTAGATG CGGAAAATTA TTTCATGAGT GCAGTACCTA TTGCATTTCC ATGGTTTACA ATCATTGCTA TTAATATTGC AGCCTTGTTA ACCCTTACAG CAATTCTCTG GATTCCTATC TATTTTATTT CCAGAGTGAG TCCGGTAAAA GCAATAAAAT TCAATTAA
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Protein sequence | MNLYYFISSR IQKNDRQSFS SLVHRIAVII IFLGFLLSVT SLCILDGFKT SIRQKIFSFG AHIHLTKYDL DKSYEESPFI INTGTLDSIK AIPNIEHVQG VSHKPCLLKS SSEIQGVILK GVGPDFDIDR FKSNMLEGRF ITFNDSGYSK QIVISEKIAH KLNLKTGDSL LLYFVQNPPR YRKVSISGIY KTGLEELDEL FIIGDIQLNR VLSAWSPKQI GGLEIYVSDF NMLDSTASEV YKRMEYDMQI QLITDKYLQI FDWLNLLNRN VTIFLALIMG VSIFVIISTI IVMIMERTSM VGLLKAFGTT NSDVSKIFLW NGFKIIIIGM LGGNVVALTL CALQYYTGIV PLDAENYFMS AVPIAFPWFT IIAINIAALL TLTAILWIPI YFISRVSPVK AIKFN
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