| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1561 |
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| Symbol | tpn50 |
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| ID | 4185731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 1829549 |
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| End bp | 1831474 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638071555 |
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| Product | OmpA family outer membrane protein |
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| Protein accession | YP_678172 |
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| Protein GI | 110637965 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.322672 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATAAGT GCTTAATTAT TTCAATTCTC ACATGGTTTT CATGTATCGT TTCTGTTTAT
GCGCAAGCAA TACCAAAAGA AGCGAGAAAT TATCTGGAAG AAGGAAAGAT CTATTATGAT
GGAGCGAATT ATTTAAAAGC CCTGGATAGT TATCTGGGTG CTTATAAATT TGTGCCGAAT
GATCCCGGAG TGAATTATTC CATTGCCTTA TGTTATATTC AAACCTATAG TTACGATAAA
GCATTAACGT ATTTGATTCC TGCAAAAAAA GCAGGGATAA AAGATCCCTT GTTAGATTAT
TATATGGGGC TTGCCTATCA TGCCAACAGT AATATTGATG AGGCGTTAAA GAGCTTGACA
GCTTTTCAGT CTACACTGCG TTCTTCTGAC AAAGAACTCA CTGCTCAAAC AGCAAAATAT
ATAACGTATT GTAATAATGC GAAGACATTG ATGCTGACTC CGGTAAAGAT GACAATCACA
AACCTGGGTG CATCTGTAAA CTCTGCTTAT CCGGATTATA ACCCGGCAAT CAGTGTAGAT
GAATCAACCA TTATTTATAC ATCCAGAAGG CCAAACTCTA CCGGTGGACT TATATCGGAA
ATGGACGGAC ATTATTTTGA AGATATTTAC ATGTCGAATA AACAGACAAA CAATTCCTGG
GGAACAAGTA TTCAGATTGA TCAGACAATC AACACAACAA GCCACGACGC CTGTGTAGGA
CTGTCTTCAG AAGGTCAAAC AATGATTGTA TATAAGGACG ACGGCGGCGG TGATTTATAT
TACAGTAATT TATCCGGACA AAACTGGAGC AAGCCCATTT CTTTTGGTAA GGCAATAAAC
ACCGACGGAT GGGAAGCATG CGGAAACTTT TCTCCGGATG GAAATTATCT GTTTTTTGTT
TCAAATAAAA AAGGCGGATT CGGTGGTACA GATATTTATT ATGCTGTTAA AAATGCTGCA
GGCGTGTGGG GCGCACCGGT AAATATGGGG CCTGAAATCA ATACAAAGGA AGATGAATTT
TCGCCGTATT TGCATGCAGA TGGAAAAACA TTTTACTTTA GTTCGCAGGC GCACACATCA
ATGGGTGGAT TTGATATTTT TCAATCAACC ATTGATTTAT CTATGCAACC TATTGCAGTG
AAATCGAAAC CGGAAAATCT AGGGTATCCG ATCAATACGG TTGGTGATGA AATCTATTTT
GTGTGGTCTG CAGATAATAA ACGTGCGTAT TTCTCTTCAG CAAGAGAAGG TGGTTTGGGC
GACAAAGATT TATACCTGCT TGAACGGCCA GTTGCTAAAG CGGCGTTGGT ATTATTAAAA
GGTACAATTT CTGATTGTAA AACAAAAGAA TTTATACAGG CAAGTATTAC TGTAACAGAT
ATCGAAAGCG GCAAACTGAT TGGTAAATAT GTATCAAACA GTTCAACCGG TAAATACATT
GTAACATTAC CCGCAGGTAA AAATTATTCA ATAACGGTAG AAGCAAAAGG ATATTTATTC
CATTCAAAAA ATATCAATAT TCCTAAACTG GAAGAGTTTA AAGAAATAGA TGATGTGATC
TGCCTGGATA AAATTGATAT TGGTACAACC ATTGTTTTAA ATAACGTATT CTTTGATGTA
AATAAATCTA CACTAAGAAA GGAATCAGAA ACTGAACTGG ATAAATTGTT TGATATATTA
AGTAAGAATC CAAAAATTAA AATTGAAGTT GCAGGCCATA CCGATAGTGA CGGAGATACA
CAGGCAAACC TGACGCTTTC AGATGCACGG GCGCATACGG TAAAAGATTA TTTAATTGGC
AAGGGTATCT CGGCTGACCG CATTATTTAT GTTGGCCATG GGGAAGGAAA ACCGGTGGTG
CCAAACGATA CGCCGGAAAA TAAGCAGTTG AACAGAAGAA CGGAGATAAA AATTCTGGAA
AATTAA
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| Protein sequence | MYKCLIISIL TWFSCIVSVY AQAIPKEARN YLEEGKIYYD GANYLKALDS YLGAYKFVPN
DPGVNYSIAL CYIQTYSYDK ALTYLIPAKK AGIKDPLLDY YMGLAYHANS NIDEALKSLT
AFQSTLRSSD KELTAQTAKY ITYCNNAKTL MLTPVKMTIT NLGASVNSAY PDYNPAISVD
ESTIIYTSRR PNSTGGLISE MDGHYFEDIY MSNKQTNNSW GTSIQIDQTI NTTSHDACVG
LSSEGQTMIV YKDDGGGDLY YSNLSGQNWS KPISFGKAIN TDGWEACGNF SPDGNYLFFV
SNKKGGFGGT DIYYAVKNAA GVWGAPVNMG PEINTKEDEF SPYLHADGKT FYFSSQAHTS
MGGFDIFQST IDLSMQPIAV KSKPENLGYP INTVGDEIYF VWSADNKRAY FSSAREGGLG
DKDLYLLERP VAKAALVLLK GTISDCKTKE FIQASITVTD IESGKLIGKY VSNSSTGKYI
VTLPAGKNYS ITVEAKGYLF HSKNINIPKL EEFKEIDDVI CLDKIDIGTT IVLNNVFFDV
NKSTLRKESE TELDKLFDIL SKNPKIKIEV AGHTDSDGDT QANLTLSDAR AHTVKDYLIG
KGISADRIIY VGHGEGKPVV PNDTPENKQL NRRTEIKILE N
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