Gene CHU_1501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_1501 
SymbolcusB 
ID4185398 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp1730348 
End bp1731562 
Gene Length1215 bp 
Protein Length404 aa 
Translation table11 
GC content35% 
IMG OID638071494 
Productcomponent of copper transport system 
Protein accessionYP_678112 
Protein GI110637905 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.000252405 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0292911 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCTAC ATATGAAAAA TATAGTATTA GGCTTAACGC TTCTGATAGT AGCATGGTCA 
TGTAACAAAG AATCCGGAAA AAATACTCCT GACAATGTAT TCTATACATG TTCAATGGAT
CCTCAGGTCA TGGAGAAGAA ACCTGGAAAA TGTCCGATTT GTAAAATGGA TCTTACAAAA
GTTATTATTG ACAAAAATGA TATGCAAAGC GGATTGAAAT TAAATAACGA ACAGGAACAA
TCCGCTAACA TCAAAACCCT AATCATTTCA GAAGGAGATT TAGGAAGAGA AAAAACAGTC
AATGGTCGCA TAGTAATCAA TGAAAATAAA CGTTTCAAAA TCAGTAGTAG AGTAAGCGGG
AGAATTGAAA AACTTTACAT AAAAAGTCTT GGGGAAACAA TAAGCAAAGG AGTAAAACTA
TATGATTTAT ATAGCGAAGA TCTTTTAGTT GCTCAAAGGG AATACCTGAT TGCAATAGAA
AAATCTAAAG AGTTTTCAGG ATCTGAATTG GATTATATTC AATTAGCCGA TGGGGCCAAA
AACAAATTGA TTTTATGGGG AATGAATGAA AATCAAATAA AATCACTGAT TAATAAAAAA
GAACTAAGCA ACACCGTCAC CATTTATAGC CCATATAAAG GAGTTGTAAC TTCAGTAAAC
AAAAGAGAAG GCGATTATGT AATGGATGGA GATGTTGTCT TCGAAACAGC GGACCTATCT
ACGTTGTGGG TAGAAGCGGA ATTGTATGCC GGCGAAGTAA ATGAGTTTGA TGTGAATGAC
CCCGTTGCAA TAAAGATTAT TGGTTTCCCA GGAAAAATAT GGAACAGTCG TATTGACTTT
TTTGCACCTC AGCTACAAAC TCAGTCTAAA GTAAATCTTG TAAGAGCTGA AATATCTAAT
ACTGACATGT CATTAAGGCC AGGAATGCAA GCAAATATTG TATTAAAAGA AAACACAAAG
AAAGCGTTAT TTCTTCCATT AAATGCAATA CTTCAGGATT CTAAGGGAGC AACGGTTTGG
ATTAAGGAAA AAGATGGTTC TTATCATAGC AGGATGGTTA TAACAGGCAT TGAAAGCAAT
GACAATATAG AAATCCGTTC AGGTATCGAG GCCGGCGAAG AAGTTGTTAT CAATGGTGCA
TACTTGCTCA ACAGCGAATA TATATTTAAA AAAGGAACTA ATCCTATGGC AGGTCACGAT
ATGTCTAACA TGTAA
 
Protein sequence
MNLHMKNIVL GLTLLIVAWS CNKESGKNTP DNVFYTCSMD PQVMEKKPGK CPICKMDLTK 
VIIDKNDMQS GLKLNNEQEQ SANIKTLIIS EGDLGREKTV NGRIVINENK RFKISSRVSG
RIEKLYIKSL GETISKGVKL YDLYSEDLLV AQREYLIAIE KSKEFSGSEL DYIQLADGAK
NKLILWGMNE NQIKSLINKK ELSNTVTIYS PYKGVVTSVN KREGDYVMDG DVVFETADLS
TLWVEAELYA GEVNEFDVND PVAIKIIGFP GKIWNSRIDF FAPQLQTQSK VNLVRAEISN
TDMSLRPGMQ ANIVLKENTK KALFLPLNAI LQDSKGATVW IKEKDGSYHS RMVITGIESN
DNIEIRSGIE AGEEVVINGA YLLNSEYIFK KGTNPMAGHD MSNM