| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1499 |
|---|
| Symbol | copA |
|---|
| ID | 4185396 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 1727257 |
|---|
| End bp | 1729671 |
|---|
| Gene Length | 2415 bp |
|---|
| Protein Length | 804 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 638071492 |
|---|
| Product | cation-transporting ATPase; copper-exporting ATPase |
|---|
| Protein accession | YP_678110 |
|---|
| Protein GI | 110637903 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.037718 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0386539 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACGA AAGACATATT TGAAATACCT TTATCAGGTG TACATAGTGA GCATTGTGCT
CTTTTAGTAG ACAAGACATT TGCTCAGAAT ACCGACATTT CTACTCATAA GGTAGACTTC
AATAATGAAC GTGCTTTACT TAATTTTAAA TCATTAACTC CTGATTTTAC GAAGGTGGTT
AAAGATATCC GCAGTATCGG ATATGATGTA TTAACTGTTA AAAAATCATT TCCGGTTCTT
GGAATGTCTT GTGCATCCTG TGCAAGCAGT TCACAGAGTA TTCTTGAAAC ACAACCTGGT
GTGATAAGTG TTGCTGTAAA TTATGCAAAC ACAACAGCGC AGATAGAATA TATTCCAACG
ATTACAAATC CAAAAAAACT TAAAGCTTCA TTACAATCTA TCGGTTACGA CTTGATGGTT
GATGAAAGCG AAGAAGCAAA AGACACGCTA GAGGAAATTC ATAAAAAAAA TTATACGATT
CTTAGGAATA AAACAATTGC AGCAATCGTA CTCTCATTAC CTATCGTTGT AATAGGGATG
TTTTTTATGG ACATACCATA TGCAAATTAT ATTATGTGGG CATTGTCTAC ACCTGTGATT
GGCTATATAG GGAGTTCTTT TTTTATCAAT GCCTGGAAAC AAGCCAAACA TAGGTCTGCT
AATATGGATA CACTGGTTGC ATTAAGCACA GGTGTAGCAT ATTTCTTTAG TGTATTTAAC
ACTTTGTTTC CTGAATACTG GCATCAGAAA GGCCTTCATG CACATGTATA TTTTGAAGCG
GCTTCGGTAG TTATTGCTTT TATTTTACTC GGAAAATTAT TAGAAGAAAA GGCTAAAGGA
AATACATCTT CTGCAATTAA AAAATTAATT GGTTTGCAGC CTAAAACGGT TACGGTCGTT
CATCAAGGTG GTCATCAGGT TGAAACGCCG ATAGCTAATG TAAAGATTGG TGATGTACTA
TTAGTGAAGC CGGGAGAAAA GATTGCTGTA GACGGCAAAC TTGTTTATGG CAACTCTTTT
GTGGATGAAA GTATGATAAG TGGCGAACCT ATCCCTATTG AAAAAAATAT AAATGATTCT
GTGCTTGCAG GCACGATAAA TCAAAAGGGA AGTTTTCAAT TCGTTGCAGA AAAAGTCGGT
GGAGATACGA TGCTGGCACA CATAATTAAA ATGGTGCAAG ATGCACAAGG TAGTAAAGCT
CCGGTTCAAA AACTTGTTGA TAAAATCGCA GGTGTATTTG TACCGATAGT TATTGTAATA
GCAATCTTAA GTTTAATAGT GTGGGTGTTG TTTGGAGGCG AAAACGGTTT CACGCAAGGT
ATGCTGGCAA TGGTTACTGT TCTTGTAATA GCGTGCCCTT GTGCGTTAGG ATTGGCCACT
CCTACGGCAA TAATGGTTGG TGTCGGGAAA GGTGCTGAAG CTGGCATCTT GATAAAAGAT
GCTGAAAGTC TTGAGACTGC AAGGAAGATA AATGCAATTA TCCTCGATAA AACAGGAACG
ATTACAGAAG GCAAGCCTGC TGTGACGGAT GTTATTTGGT TGAATGAAAA CGCAGACAAA
ATTAACGTTT TCGCATCCAT TGAAAAACAA TCCGAACATC CCCTTGCGGA AGCTGTTGTT
AACTATTTTG GAGAAATGAG TTACCTAAAA GTTGATAATT TTGAAAGCAT TACCGGTTCT
GGAGCAAAAG CGGTTGTAGA TAATACATCG TATTTCATAG GTAATATGAA ATTGATTGAT
GCACAAAAAA TCAACATACA TACAAATCTT AGAAATAAAT CTAATCTATG GCTTAAAGAA
GCTAAGACTG TCATTTACTT TGCTAATACC ACAGAAGTTT TAGCAGTATT AGCTATTTCG
GATAAAATCA AAACTACTTC CATAGATGCA ATTAAACAAC TCAAAACGTT GGGCATAGAA
GTATATATGC TTACAGGCGA CAATACCTTT ACTGCTGAAG CTATAGCCAA GCAAGTCGGT
ATAAGTCAAT TTAAAGCAGA AGTGTTACCA TCTGATAAAG CGAATTTTGT TAAGGAGCTG
CAGGCACAAG GTAAAGTTGT TGCAATGGTA GGTGACGGAA TCAACGACAG TAATGCATTG
GCACAGGCTA ATGTTAGTAT AGCCATGGGC AAAGGAAGTG ATATTGCAAT GGATGTTGCA
AAAATGACTA TCATTTCATC TGACCTTTCT AAAATACCTC AAGCAATAAA ACTATCTACC
TATACGGTTA ATGCCATCCG ACAAAATTTA TTCTGGGCAT TTATCTATAA CATAATCGGT
ATCCCTTTGG CAGCTGGTAT CCTCTACCCT TTTACAGGTT TTTTATTAAA CCCAATGATT
GCCGGAGCAG CTATGGCACT GAGCTCTGTA AGTGTTGTTA GTAACAGTTT GAGATTAAAA
TTTAAATCCA TTTAA
|
|---|
| Protein sequence | METKDIFEIP LSGVHSEHCA LLVDKTFAQN TDISTHKVDF NNERALLNFK SLTPDFTKVV
KDIRSIGYDV LTVKKSFPVL GMSCASCASS SQSILETQPG VISVAVNYAN TTAQIEYIPT
ITNPKKLKAS LQSIGYDLMV DESEEAKDTL EEIHKKNYTI LRNKTIAAIV LSLPIVVIGM
FFMDIPYANY IMWALSTPVI GYIGSSFFIN AWKQAKHRSA NMDTLVALST GVAYFFSVFN
TLFPEYWHQK GLHAHVYFEA ASVVIAFILL GKLLEEKAKG NTSSAIKKLI GLQPKTVTVV
HQGGHQVETP IANVKIGDVL LVKPGEKIAV DGKLVYGNSF VDESMISGEP IPIEKNINDS
VLAGTINQKG SFQFVAEKVG GDTMLAHIIK MVQDAQGSKA PVQKLVDKIA GVFVPIVIVI
AILSLIVWVL FGGENGFTQG MLAMVTVLVI ACPCALGLAT PTAIMVGVGK GAEAGILIKD
AESLETARKI NAIILDKTGT ITEGKPAVTD VIWLNENADK INVFASIEKQ SEHPLAEAVV
NYFGEMSYLK VDNFESITGS GAKAVVDNTS YFIGNMKLID AQKINIHTNL RNKSNLWLKE
AKTVIYFANT TEVLAVLAIS DKIKTTSIDA IKQLKTLGIE VYMLTGDNTF TAEAIAKQVG
ISQFKAEVLP SDKANFVKEL QAQGKVVAMV GDGINDSNAL AQANVSIAMG KGSDIAMDVA
KMTIISSDLS KIPQAIKLST YTVNAIRQNL FWAFIYNIIG IPLAAGILYP FTGFLLNPMI
AGAAMALSSV SVVSNSLRLK FKSI
|
|---|
| |