Gene CHU_1491 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_1491 
SymbolumuD 
ID4185388 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp1719087 
End bp1719515 
Gene Length429 bp 
Protein Length142 aa 
Translation table11 
GC content34% 
IMG OID638071484 
ProductSOS mutagenesis protein UmuD 
Protein accessionYP_678102 
Protein GI110637895 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.00671192 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000906446 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGATTGAGC TGTATCAAAT TGATTCTTCT ACTGCTACAC TGATTCCATT TATTTCAGAT 
AAGCTGGTTT GTGGTTTCCC TTCGCCAGCT ACAGATTACC TTGATCTATC CATTGATTTA
AATAGAGAGC TTATTACTAA TCCGAATGCT ACTTTTTGCG GAAGGGTAAA AGGAAACAGC
ATGATTGATG CCGGAATTGA GGAAGGAGAT GTATTGATCA TTGATCGTTC AAAAGAGCTT
ACCGATAACA GCATAGCGGT TTGTTTTTTA GATGGCGAGT TTACCGTTAA GCGGGTGAAG
GTTTATAAGT CTAAAAAAGA AATTCATTTG ATGCCTTCTA ATAAAAATTT CAAACCCATT
ATTGTTACTC CCGATAATGA ATTTACAATA TGGGGTATTG TAGTATACAC AATTAAAAAA
AATTATTGA
 
Protein sequence
MIELYQIDSS TATLIPFISD KLVCGFPSPA TDYLDLSIDL NRELITNPNA TFCGRVKGNS 
MIDAGIEEGD VLIIDRSKEL TDNSIAVCFL DGEFTVKRVK VYKSKKEIHL MPSNKNFKPI
IVTPDNEFTI WGIVVYTIKK NY