Gene CHU_1331 details

Gene Information

• Locus tag: CHU_1331
• Symbol: nirD
• ID: 4185836
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cytophaga hutchinsonii ATCC 33406
• Kingdom: Bacteria
• Replicon accession: NC_008255
• Strand: -
• Start bp: 1546558
• End bp: 1546917
• Gene Length: 360 bp
• Protein Length: 119 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 638071325
• Product: assimilatory nitrite reductase (NAD(P)H) small subunit
• Protein accession: YP_677943
• Protein GI: 110637736
• COG category: [P] Inorganic ion transport and metabolism; [R] General function prediction only
• COG ID: [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases
• TIGRFAM ID: [TIGR02378] nitrite reductase [NAD(P)H], small subunit

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 7
• Fosmid unclonability p-value: 0.114778
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACAATG TAACAACAAC TCTTACAGAT ACTACCTGGT ATAAAGCCGG AACTATTACA 
GACGTACCTG AAAACGGCGG CGCATGTGCC ATGATACAAG GAAAACAGAT TGCAATATTT 
AATTTTACGC GCCGCGATGA ATGGTTTGCA ACGGATAATC TTTGTCCGCA TAAACAGCAG 
ATGATTCTTT CCCGTGGAAT GATTGGTGAC ATGAGTGAAG AACCTAAAGT AGCCTGTCCC 
TTTCATAAAA AATCATTTTC ATTAAAAGAT GGTCATTGTA TGTCGGGTGA TGACTATACT 
ATAAAGACCT ATCCAATCAA AGTAGAAGAC GGTTTAATTT TTATTGGCCT GAATGAATAA 

 

Protein sequence

MNNVTTTLTD TTWYKAGTIT DVPENGGACA MIQGKQIAIF NFTRRDEWFA TDNLCPHKQQ 
MILSRGMIGD MSEEPKVACP FHKKSFSLKD GHCMSGDDYT IKTYPIKVED GLIFIGLNE