| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1309 |
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| Symbol | |
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| ID | 4186119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 1519865 |
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| End bp | 1521412 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 638071303 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_677921 |
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| Protein GI | 110637714 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.153473 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACATT CATTACTATT TTCAGCTTTA TTAACACTTG TTTTTTCTGT TTCTGCCCAA
ACATCCAATA AAGGAAAAAT ATTTAATATG CAGGGCCCGG GAGCAGCATC ATGGGATTTA
TTAGAACATA AAGCTTTGTT TATCACATCA AAAGCTGATC ATAAAGATTT AGTAAACATT
ACCGATTCAA TTGATTTGCC TGTTTTCAAA AAAACATTCA AATCCTATAA TTCTTCTCAT
TTTTTAAAAG TCGACAAAAC ATTACCCAAA TTATCTTACG AATCACTAGA ATCTGCTTTT
AATGCAGGAA AATATACATC CAGCATTGAT GAGGTTAAGG TAGGTGATGT CTACATCGCT
AAAATCAGAG AATCCAAGAG TTTTGCATGG ATTAAAATCA CACACATTGA AGATGATGGA
AAATCAAAAG CAACTGGCGG CAATAACAAT GACTACATTG AATTTGAATA TACTGTATTT
TCAAATATTG ATACGCACGG TACTTTCAAT GAAGGTTTAG AGTTATTCAA AAAAGGAAAT
TTTATTGGCG CATATGATAA ATTTAAAGCT GCTGCTGTAG CCGATCCAAA CGGATATGAA
GCGTATTATT ATATGGGTTT ATGCAAAATG GAACTTGGTG ATTATCCTGC AGCAATCACA
AATTTTGACA AAGCAATTGA TATAAAACCG AAGTACACAG CAGCATTCTC AAAGAGAGGT
ATGTCTAAAA GCAAAGAAGG TTTTAGAGAT GAGGCAATTG CAGATTTTAC AACGGCAATC
AAATACGATT CTTCTTATGC TGAAGCATAT CAAAACCGTG CACACGAATT ATTTTTATTA
AGCCGTTACG AAGAATCAAT CACCGATTAT TCAAAAGTGA TTGCATTGCA GCCGGATAAT
TTCCAGGCAT ATTTTGGCAG AGGACAATCC AAAGCTGAAT TTGGCAAGCA CGTAGAAGCT
ATTGCAGATT ACAACAAGGC AATTGTTCTG TATCCGAACT TTACATACGC TTACTTTTAC
AGAGGCTTTT CAAAAAGCTA TTTAGATAAT TTCAGTGATG CAATAAAAGA TTTTAATAAA
GCCATACAGC TTGATCCAAA CGATCATCCT GCCTATTTCA ACAGAGCATA CTGCAAACGT
GAAGAAGGCG ACTACGAAGG TGCTATAAAA GATTACAATA AATGTATTTC ATTAAAACCT
CAATATGAAG AAGCGTATTT TCAAAAAGCA AATACCTTAT ACATGATGGG TGATAAAACA
GCTGCCATTA AAGAATACGA TGAAATTGTT AAAAAATTCC CGAATGAATC TGCAGCCTAC
GCAAATCGTG GTTTCTTTAA TATGAACATC AAAAAAGATA AAGAAGCAAT GGATGATTTC
AATAAAGCGA TCACACTCAA TGAAAACAAT CCTGAAGCGT ACAGATACAG AGCGGTATTA
AAAAGTGAAA TCAAAGATAA AGAAGGTGCC TGCGCAGACT TAGCAAAAGC TGTTGCACTT
GGCGATCAGG AATCTATTGT TTTACAAAAA GATATTTGTA AGAAATAG
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| Protein sequence | MKHSLLFSAL LTLVFSVSAQ TSNKGKIFNM QGPGAASWDL LEHKALFITS KADHKDLVNI
TDSIDLPVFK KTFKSYNSSH FLKVDKTLPK LSYESLESAF NAGKYTSSID EVKVGDVYIA
KIRESKSFAW IKITHIEDDG KSKATGGNNN DYIEFEYTVF SNIDTHGTFN EGLELFKKGN
FIGAYDKFKA AAVADPNGYE AYYYMGLCKM ELGDYPAAIT NFDKAIDIKP KYTAAFSKRG
MSKSKEGFRD EAIADFTTAI KYDSSYAEAY QNRAHELFLL SRYEESITDY SKVIALQPDN
FQAYFGRGQS KAEFGKHVEA IADYNKAIVL YPNFTYAYFY RGFSKSYLDN FSDAIKDFNK
AIQLDPNDHP AYFNRAYCKR EEGDYEGAIK DYNKCISLKP QYEEAYFQKA NTLYMMGDKT
AAIKEYDEIV KKFPNESAAY ANRGFFNMNI KKDKEAMDDF NKAITLNENN PEAYRYRAVL
KSEIKDKEGA CADLAKAVAL GDQESIVLQK DICKK
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