| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1259 |
|---|
| Symbol | livF |
|---|
| ID | 4186951 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 1469920 |
|---|
| End bp | 1470633 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638071253 |
|---|
| Product | branched-chain amino acid ABC transporter, ATP-binding protein |
|---|
| Protein accession | YP_677871 |
|---|
| Protein GI | 110637664 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | [TIGR03410] urea ABC transporter, ATP-binding protein UrtE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.575608 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGATA TTATACTTGA ATCCAACGAT CTACATGCTG CTTACGGACA GAGTATGATT
TTATGGGGTT TAAATTTTAA AGCAGAAAAA GGTAAAGTAA CAACCATTAT GGGGCGCAAT
GGTGTTGGTA AAACAACTTT GTTGAAAACC ATTATGAGTC TGGTGCAGGT ATCTAAAGGT
ACAATCACCT ACAAAGGCGA AGAAATACAA ACACTACCTT CTTTTAAAAA AGCAAACATG
GGGATCGGTT ATGTGCCGCA AGGGAGAGAG ATCATTCCAA AACTTACCGT GTATGAAAAT
ATCAAACTAG GCATGGAAGC ATTGGGAAGT AAGTCGAAAG CTAAAATTCC GGAAGATGAA
ATTTATGCCA TGTTTCCGAT CTTAAAAGAT TTCAGGAAAC GTCTGGGTGG CAACTTAAGC
GGCGGGCAGC AGCAGCAGCT GGCAATTGCC CGGGTGCTTG TGAGTAATCC TTCGCTCATC
TTATTAGACG AACCTACAGA AGGCATACAG CCATCCATTG CACAGGAGAT CGGGCAGGTA
TTGAAAAACC TTGCAGCCGA AAAAGGAATT ACCATTTTAC TGGTAGAACA AAAAATTGAT
TTTGCAAAAC AGATCACCGA CTACTATTAT TTTATGGACC GCGGCAGAAT GTTAATGGAA
GGAAGCAAAG ATGAATTGGA TCTGGATGAT ATCCGGAAAT ATTTATCGGT GTAG
|
|---|
| Protein sequence | MKDIILESND LHAAYGQSMI LWGLNFKAEK GKVTTIMGRN GVGKTTLLKT IMSLVQVSKG
TITYKGEEIQ TLPSFKKANM GIGYVPQGRE IIPKLTVYEN IKLGMEALGS KSKAKIPEDE
IYAMFPILKD FRKRLGGNLS GGQQQQLAIA RVLVSNPSLI LLDEPTEGIQ PSIAQEIGQV
LKNLAAEKGI TILLVEQKID FAKQITDYYY FMDRGRMLME GSKDELDLDD IRKYLSV
|
|---|
| |