| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1256 |
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| Symbol | livH |
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| ID | 4186948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 1466349 |
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| End bp | 1467980 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638071250 |
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| Product | branched-chain amino acid ABC transporter, permease component |
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| Protein accession | YP_677868 |
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| Protein GI | 110637661 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
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| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.897203 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.359191 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACATC TTCTATATAT AACACTCTTG TTTTGGGGAA GTCTGGTTTC AGGATCTTCG
TTACAAAAAG ATTCTTTATC CTATTTTGTT CACGCGTCTA TTTCCGGAAA CGATTCAATA
AAACAATTGT CTGTTAAACG TTTGGTAGAA TCCGGTAATA CCGATGTTTA TCCGTTTCTG
GCAGCTGTCT ACGATAAAAA AATATATCTG TTCAAGGATC AGCCAGTAAC AACAGGTGTC
AGAACAACAG GAGAAGATGG TACAGATTTT TATGAAGTGT ATACACTGTA TCCGGTTAAT
GCTCCGGTAA AAGATGGTGC TGGTGTTATA ATACTTCAGC CAATATCAAA ATTAAAAGAA
GTTACGTTTG GCCGCAGCGA ACGTTTATTG ATCGGGCAGT TAGGCCCGTA CTTAAATCTT
TCAAGTGCTG ACGCTGAAAA ACGTAAGGCT GCCTACGGAC AGTTTCAAGC CTTAAAAGAT
AAAGAAGCAC TGCCGGCCTT ATATGCAGCA CGTGCAAAAG AAACATCTTC TGATGTTAAA
TCCATCGCTC AGGAGACTAT TTTTTCCATT GAATTAAATG CATCTGCGGA TGACAACAGA
AAAAAAATAT TGATTGACAG TCTCGTAATT AACTGGGGCT CCAATACAGA ATCAATCTTA
GAAGCATATG AAGCTTCGGA AAAAAATCCG GAGTTAAAAG CATATGCCAA AGCTGCCATC
GCTGATCTGA ACGGAAAACA CGAACGGTTG AGTGTTGTTC AGAATTTATT CAGCGGCTTA
AGTTTAGGAA GTATCCTGAT CATGGTTGCA CTTGGTTTGT CCATCATCTA TGGATTAGCG
GGTATCATCA ATATGGCGCA CGGTGAATTC CTTATGATCG GGGCATACAC TACATTTATT
ATTCAGAGTT TACTGCCCAA AGGTGATCTG TTCTTCTGGA TCTCTTTGCC TGTTTCATTT
CTGGTTGCAG GTGCCTTTGG GTTTATCATA GAACGGTTAA TTATCCGGTA TTTATATTCC
CGTCCGCTGG AGAGTTTGCT CGCAACCTGG GGGGTAAGTC TTGTGCTCAT CCAGTTTGCA
CGTACATTGT TTGGTGACCT TACCGCTGTA CGCACACCTG CAGTACTGTC AGGCGGCTGG
GAAATAACCT CTCATCTGGT TTTGCCATAC AACCGGTTAT TTATTATTGG CTTGTGCATC
TTTATGATTG CCATTACTTA TTATACATTA TATAAAACGC GTTTGGGTTT ACGTGTACGT
GCCGTGACAC AAAACAGAAA CATGAGTTCA TGCCTTGGAA TTGAAACAGG TAAAGTAGAT
GCCATTACAT TCTTTCTCGG CTCAGGGCTT GCCGGTACAG CGGGCTGCGC CATGACACTG
ATCGGTAACG TTGTGCCGGA TATGGGACAG ACATATATCG TAGATTCGTT CCTGGTTGTC
GTAACAGGTG GAGTAGGTAA TATTGCCGGT ACAATTGTAT CGGGTTTCGG AATCGGTTTT
ATATTCAAAA TACTCGAATC GTTCTTCGAA GCAGTGTACG GTAAAGTACT TATTCTGGCC
ATCATTATTT TATTCTTGCA ATTTAAACCT AAAGGTTTAT TCCCTGACAA AGGCCGTATT
GCTGAAGATT AA
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| Protein sequence | MKHLLYITLL FWGSLVSGSS LQKDSLSYFV HASISGNDSI KQLSVKRLVE SGNTDVYPFL
AAVYDKKIYL FKDQPVTTGV RTTGEDGTDF YEVYTLYPVN APVKDGAGVI ILQPISKLKE
VTFGRSERLL IGQLGPYLNL SSADAEKRKA AYGQFQALKD KEALPALYAA RAKETSSDVK
SIAQETIFSI ELNASADDNR KKILIDSLVI NWGSNTESIL EAYEASEKNP ELKAYAKAAI
ADLNGKHERL SVVQNLFSGL SLGSILIMVA LGLSIIYGLA GIINMAHGEF LMIGAYTTFI
IQSLLPKGDL FFWISLPVSF LVAGAFGFII ERLIIRYLYS RPLESLLATW GVSLVLIQFA
RTLFGDLTAV RTPAVLSGGW EITSHLVLPY NRLFIIGLCI FMIAITYYTL YKTRLGLRVR
AVTQNRNMSS CLGIETGKVD AITFFLGSGL AGTAGCAMTL IGNVVPDMGQ TYIVDSFLVV
VTGGVGNIAG TIVSGFGIGF IFKILESFFE AVYGKVLILA IIILFLQFKP KGLFPDKGRI
AED
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