| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1192 |
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| Symbol | pbpC |
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| ID | 4185347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 1365824 |
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| End bp | 1368148 |
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| Gene Length | 2325 bp |
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| Protein Length | 774 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638071189 |
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| Product | glycosyltransferase |
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| Protein accession | YP_677807 |
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| Protein GI | 110637600 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.224348 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.131145 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCCGA TCCGTACCTT TTTTACCGCA TACAAAAAAC ACGTCACCAG GTTTGCAGCA
ATCACAGCAG GCCTGGTGCT GTTGTTTTTT ATCCTCAACG CCTTATTTCC GCTGCCGCCG
GTGCCCTCCT ATTCAACGGT GGTTACAGGC GACAAAAATG AGGTGATTCA TGCCTTCTTA
AGCCGCGACG ATAAATGGCG CTTTAAGATC AGCACGCGTG AGCTGCACCC CGACCTGAAG
ACGGCCTTCA TTCATAAAGA AGACAACTAT TTTTATTACC ACCCGGGTAT CAATGTACTG
GCGCTGATGC GGGCGGCTTT CAACAATACC CTTCATCTGA AGAAAACCTC CGGCGCCTCT
ACCATTACCA TGCAGGTGGT GCGCCTGCTG GAACCACGGG AACGTACCTA TCTGAACAAA
ATCATTGAAG CCTTCCGGGC CCTGCAATAC GAATGGGTAT ACAGCAAAGA AGAGATCCTG
GAGCTGTATA TTAATTTTGT GCCCTACGGC TCTAACATTG AAGGGGTAAA AGCGGCCTCG
CTGCTGTACT TCCAGAAATC GCCGGAGCAG CTGAGCCTGG CGCAAATTGT TTCGCTCACC
ATTATACCCA ACCGCCCCGT ATCGCTTAAC CCGCAGCGCA GCCGCGCGCT GCTGAAAACG
GAACGCAACA AATGGCTGAA ACGGTTTGGC GAAGCAGGTA TCTTTGAACC CCAGCGCATA
CAGGACGCGC TGAAAGAAGA TGTATACGCC AGCCGCAAGC CGCTGCCCAA ACGGGCGCCG
CACCTGAGCA TACGCCTGCA TAAAAAATAC CCGAAGGCAA CGGAGATCGG CACCACCCTT
AAAGTAACCA CGCAGGAACG CGCACAGCTG ATCCTGACCA ACTACATGGC ACGCATACGC
CAGCTGGGCA TACACAACAG CGCGCTGGTT ATCTACAACA ATGAAACCCG CCGCATGGAA
GCCTATATCG GCGCCAATGA TTTTTACGAC AGCGAACACG ACGGACAGGT AGACGGCGTA
AACGCCATCC GCTCGCCGGG CAGCACACTG AAACCCTTTA TCTACGGCAT GGCTTTTGAC
AAAGGACTGC TTACGCCCAA AAGGGTGATT GAAGATATTC CCACCAATTT TGACGGCTAT
GTACCCACCA ACTTTGATGA ACACTTTAAC GGGCTGGTAT CGGTTGAAAA AGCACTGGCC
TATTCGCTGA ACATACCGGC GGTGAAAACC ATTGAACAGA TCACGCCCAA TGCCTTTACG
CAGGTGCTGG CCAAGAACGG CTTTAAGCAG ATCAAACGCG ACCAGGCACA CCTGGGCCTC
TCGGTATCGC TGGGGGGCTG CGGCGTAACG CTGGAAGAGC TCACACACCT GTATACGGTT
TTTGCGCAGC ACGGCATACG CTATCACTAC GCAACCCTGC AGCAGGACGC TGACAGCCTG
GCCAGCCGCG TGCTCTCCGA ATCTTCGGCG TATATGATCT CGGAGATCTT AACGCAGATT
ACCCGCCCCG ACCTGCCCAA CAACATGCAG AGCAGTTTTC ACATACCGCA CATTGCCTGG
AAAACCGGCA CTTCGTTTGG CCGCAAGGAT GCCTGGTGTA TCGGCTACAA CCAGAAATAT
ACCATTGGTG TATGGGTGGG CAATTTTGAT GCCACCGGTG TACATGAACT TACCGGGGCA
GACATTGCCA CGCCCCTGCT GTTTGAGCTG TTCAACACGC TGGATTATAA TTCGCAGCAG
CACTGGTTCT TTAAACCGAA GGAACTGGGG CTGCGTACGG TATGCACCTA CAGCGGGCTG
CCGATGGGCC CGCACTGCAC GGAGAGCATG ATAGACCAGT ATATACCGAA GGTATCAACC
AATGCGGTGT GCATGCACCT GAAAGAATAT ACGGTTGCGG CAAACGGGCA GTACAGCTAC
TGCACCTCGT GCATACCGGA TGGCGGCTAT ACCGTTAAGC TGTACCCCAA CCTGAGTGTG
GCACTGGCAG ATTTTTATGA CAGCCAGCAC ATACCGTATG AAAAGCCGCC GGTACACAAC
CCCATGTGCA TACGGGTGAT GGAAGAGCAG CACCCGAAGA TTGTAATGCC TGTAGCCAAT
AAAGAATACC TGATTGAACG GGCGGTACCT ACTGAACTGC AATTAAAAAG CATTGTACCC
AATGATGTAC GTAAAGTATA TTGGTATATC AACGGCAGGT TTTACCAGGA AGCGGGCCCG
AAAGACGAAG TATTTTTTTT ACCGCAGGAA GGTGTAACCA AGATAGCGTG CAGCGACGAC
CAGGGCCGCA ACAGCAGTAT AAAAATTACG GTTGGGTTTT ATTAG
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| Protein sequence | MHPIRTFFTA YKKHVTRFAA ITAGLVLLFF ILNALFPLPP VPSYSTVVTG DKNEVIHAFL
SRDDKWRFKI STRELHPDLK TAFIHKEDNY FYYHPGINVL ALMRAAFNNT LHLKKTSGAS
TITMQVVRLL EPRERTYLNK IIEAFRALQY EWVYSKEEIL ELYINFVPYG SNIEGVKAAS
LLYFQKSPEQ LSLAQIVSLT IIPNRPVSLN PQRSRALLKT ERNKWLKRFG EAGIFEPQRI
QDALKEDVYA SRKPLPKRAP HLSIRLHKKY PKATEIGTTL KVTTQERAQL ILTNYMARIR
QLGIHNSALV IYNNETRRME AYIGANDFYD SEHDGQVDGV NAIRSPGSTL KPFIYGMAFD
KGLLTPKRVI EDIPTNFDGY VPTNFDEHFN GLVSVEKALA YSLNIPAVKT IEQITPNAFT
QVLAKNGFKQ IKRDQAHLGL SVSLGGCGVT LEELTHLYTV FAQHGIRYHY ATLQQDADSL
ASRVLSESSA YMISEILTQI TRPDLPNNMQ SSFHIPHIAW KTGTSFGRKD AWCIGYNQKY
TIGVWVGNFD ATGVHELTGA DIATPLLFEL FNTLDYNSQQ HWFFKPKELG LRTVCTYSGL
PMGPHCTESM IDQYIPKVST NAVCMHLKEY TVAANGQYSY CTSCIPDGGY TVKLYPNLSV
ALADFYDSQH IPYEKPPVHN PMCIRVMEEQ HPKIVMPVAN KEYLIERAVP TELQLKSIVP
NDVRKVYWYI NGRFYQEAGP KDEVFFLPQE GVTKIACSDD QGRNSSIKIT VGFY
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