| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1158 |
|---|
| Symbol | |
|---|
| ID | 4184530 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 1337115 |
|---|
| End bp | 1338734 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638071155 |
|---|
| Product | leucine-rich repeat-containing protein |
|---|
| Protein accession | YP_677773 |
|---|
| Protein GI | 110637566 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0603774 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.76428 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT ACCTATACAT ATCAGTTATC TATTTTTTAT TTGCCGGCAT ATACGCGGCA
AATGCCCAGC CTTATTATAC CATTCCGGAT ATAAATCTTC GAAATGTATT AATAAGAGAT
TACCCTGCCT ATATGAATGC TGAAGGGCAG CTGAATGTAG CCGCAGCAAA AATGATGTCG
GCCGATCTGA ATCTTGACAA TGCAGACATT CAAAACCCTG ACGGAATACA GTTCTTTGAA
AAAACGGGAA TTCTGCGTTT GAGAAATAAT AGAGTAACAA ACGTGTCGCA GTTAAGCTAC
ATGAAAAATT TACGCCGGAT TTATGTAAAC GGAAATCAAA TCACTTCCAT TCCTAATCTG
GCAGACCTTT ACCAGTTAAT TGATTTGTAT GTCGGGAATA ATAAAATAAC TTCTATTGCA
AGCATTGCAA ATAAAACAAC GCTGCTGTAT TTAAATGCTG CCGGAAATGC GCTGACTGAA
ATACCGGATC TTTCTGCATT GGTAAATCTT AAAACATTAG CGCTGGATTT TAATTCAATC
AGTGTGTTGC CTGACTTAAG CATGAATAGT AATCTTCAAC AGCTTAGTAT AAGCAACACC
AATATCCATA GTATTCCCAG CCTGCCGACT CTTCTCAATC TTGAAATATT CAATTGTGAA
AAGACAAACA TGACAGATCT TTCGGGTTTA CATACAAACA CAAAACTGAT TAAACTGCTT
GCTCAGAATT GCAGAGTAAG CACACTTCCG AACTTTGCCA ACAAACCAAA CCTTACTACT
GTAAACCTTT CAGAGAATTA CCTTACGTTT GAAGATCTTA TTCCGCTGGC ATCACTTCCG
AATTTTTCTG TCTTTACCTA TGCACCGCAG AAGAACATCA GTATTCCTGC CTATGTGGAT
ATACGCGAAC GTAATATGTA TACCTACCAG ATTCCGATCG ACCCTGCACT TACAACAAAT
ACATTTACCT GGTATAAAAA CAACACACCC TTGTTAACAA ATGCTACAGG GAACTACAGC
TTCGCTCCTG CTTTCATGAG TGATTCAGGT ATATATTCTG CATACATTAC AAATGCTGCA
TTGCCGGGCC TTACACTAAA GACCAATACA TCAAAACTAA CCGTACGTAC GTGTATGGAC
ATCAGCAAGC TAAACATAAG TGTATTATCT TCCGATTGCC GTGAAGGCTC CCTGATAGAC
ATTGCCGGCA CAACGGTTGA CGGTGCTGTA GCTCCGGTCA ATTATATCCT TCAATCAACA
AGTCCTGTAA AAAATATGAC AGGAATTACA GCTACACAGT TTCCTAACAT CATACCGGGA
ACGTATGTAT TACAGGCAAC CGATTCAAGA AACTGCACAA CCTACAAGAC ATTCCTGCTG
GATAAAGGAA GCGATTGCGA ATCTGTTTTT TCCCCCAACG GAGATGGCAT CATGGATAAT
TATTTTATTC CTGACATTGG AACGGTACGG ATTTACAATA CTTCTAAAAA ATTAATTAAA
ACACTTCAGG TTCCCGGCGC GTGGGACGGA TCAACCGATG CTGGCGGCAT GGCCGATTCG
GGTTATTATG TCATTATCAT CAATGAATCC GGCAGCATCG GTGTAAGCCT TATGAGGTAA
|
|---|
| Protein sequence | MKKYLYISVI YFLFAGIYAA NAQPYYTIPD INLRNVLIRD YPAYMNAEGQ LNVAAAKMMS
ADLNLDNADI QNPDGIQFFE KTGILRLRNN RVTNVSQLSY MKNLRRIYVN GNQITSIPNL
ADLYQLIDLY VGNNKITSIA SIANKTTLLY LNAAGNALTE IPDLSALVNL KTLALDFNSI
SVLPDLSMNS NLQQLSISNT NIHSIPSLPT LLNLEIFNCE KTNMTDLSGL HTNTKLIKLL
AQNCRVSTLP NFANKPNLTT VNLSENYLTF EDLIPLASLP NFSVFTYAPQ KNISIPAYVD
IRERNMYTYQ IPIDPALTTN TFTWYKNNTP LLTNATGNYS FAPAFMSDSG IYSAYITNAA
LPGLTLKTNT SKLTVRTCMD ISKLNISVLS SDCREGSLID IAGTTVDGAV APVNYILQST
SPVKNMTGIT ATQFPNIIPG TYVLQATDSR NCTTYKTFLL DKGSDCESVF SPNGDGIMDN
YFIPDIGTVR IYNTSKKLIK TLQVPGAWDG STDAGGMADS GYYVIIINES GSIGVSLMR
|
|---|
| |