| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1157 |
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| Symbol | |
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| ID | 4184529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 1332274 |
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| End bp | 1336074 |
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| Gene Length | 3801 bp |
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| Protein Length | 1266 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638071154 |
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| Product | rhamnogalacturonan lyase |
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| Protein accession | YP_677772 |
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| Protein GI | 110637565 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.219501 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.380242 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGAAT TCTACATTCT CTCAACGCTG AAAAGAATCA TTTTTATAAT TTTCCTTTCT
GGCATTACTT TTCAGCATAC ATTTGCTCAA TACCAGATGG AACAGCTCAA CCGAGGGGTT
GTAGCTGTAA GTATGGGTGG AACCAAAGTA TTTGTCAGCT GGAGATGGCT GGGGACAGAA
GATAACATCA CGTTCAATTT ATACCGAAAC GGTACAAAAA TAAACAGTAC ACCGCTTACA
GTAAGCAATT ATACGGATAA TGCGGGCAGC ACCTCTGCTT CCTATACCGT AAAAGCTATC
GTTAATGGTG TTGAGCAGGC CGCTTCTGAG GCTGCAACAC CATGGGCACA AAAATATTAT
ACGCTGCCGT TAAATGTACC TGCAGGCGGA ACAACGCCAA CAGGAGAAGC TTATACGTAT
AGTCCGAATG ATTGTAGTGT AGGTGATGTG GATGGCGATG GCACATTGGA AATAGTTGTT
AAATGGGACC CTTCCAATGC AAAGGACAAT TCGCAATCTG GCTATACCGG GAATGTATAC
ATTGATTGTT ATACAATGAA AGGTGTGTTT TTATGGAGAA TCGATCTTGG AAAAAATATC
CGTGCAGGCG CGCATTATAC ACAATTCCTG GTGTATGATT TTGATGGAGA CGGAAAAGCA
GAAATGGCGT GTAAAACTGC CGACGGAACA AAAGATGGCA AAGGCGTTGT GATAGGATCT
GCAACAGCAG ATTATAGGAA CAGCAGCGGT TATATTTTAA GCGGCCCTGA ATTTCTAACC
GTATTTAACG GGAAAACAGG AGCTGCAATG GCTACTGCAA ATTATACGCC CGGCAGAGGC
ACGGTGTCAA GCTGGGGAGA CAATTATGGA AACAGAGTAG ATCGTTTTAT TGCAACGGTT
GCTTATCTTG ACGGACAGCG CCCGAGCATG GTTTTCGGAC GTGGTTACTA CACACGTTTG
GTACGTTCTG CCTGGGATTT CAGAAACGGC CAGTTAACAC AACGCTGGAT CTTTGACAGC
AATGCGTCCG GAAATGGCAG CTATGCAGGC ATGGGCAATC ACCAGATGAC GGTTGGAGAT
GTTGATGGAG ATGGCAGGCA GGAAGTATGT AACGGCTCAA GCGCGGTAGA TAATGATGGT
AAAGGTTTAT ATTCAAATGG ACTTGGGCAC GGTGATGCGC TGCACATGAG TGATATGGAC
CCTGACAGAC CGGGCCAGGA AGTATGGCAG TGTCATGAAG AACCTAAAAA ATATGGCAAC
AATGGCCTGG CTTTTAAAGA TGCAAAAACC GGACAGCCGA TCTGGAGCCT GGGTGGCGGA
GATCAGGGAG ATATCGGCCG CTGTATGGCC GGTGATATTG ATCCGCGTTA TAAAGGATAT
GAAGTATGGG GATCATCGGG TTCGTTGTAT ACATGTAAAG GTGTAGCCAT AGGAACGTCA
AAACCTTCTG TAAACTTTGG TGTTTACTGG GATGGCGACC TGCAGCGCGA ATTACTGGAT
GGGGCTAAGC TGGATGAATG GGATTATGTG AATAACCGCA TGAACCGGTT AGCAACATTA
TATGATGCCT CTTATGGCGG CGGTACTCCA TGTAATACAA CAAAAGCCAC ACCGAATATC
TCCGGAGATT TATTCGGAGA CTGGCGTGAA GAAATTATTT TACATTCAGC AGATAATAAA
AATCTGCTGA TCTATACAAC AACCATTCCG TCTGATTACA AATTCAGAAC TTTGCTGCAT
GACCCGCAAT ACCGCGTAGC TATTGCCTGG CAGAATGCTG CATATAATCA GCCCCCGCAT
CTTAGTTATT ATCTGGGTAC CGATATGGCA ACGCCTGCTA AACCTGATAT AACAATCGTT
GGAAATAATA CAACAGGTTG TGTCCCGGCA ATAGCTGTAC CTTCAACTGC TTTCTGTGCC
GGTGGGTCTG TGCTTATGAC AGCAACCACA GGAACTTCCT ATAAATGGTT CAATGGAACT
TCTCAGGTAG GAACAGCTGC AACCTATACA GCTACTACAG CCGGAAATTA TACGGTAGAA
GTGACGAATG CTTCAGGCTG TAAAGCAACA AGTATTCCGG TAACAATCAC GGTTAATACA
TTACCCGTTA TTACTCCATA TGTAAAAATA GATGCAAATG CATGGACCAG TAGTTCAACA
GCTGCAGTCT GTGAAGCTGA CACAGTCAAT TTCGGACCGC ATCCTAATGT TGCTTCTGGC
TGGAGTTGGA CAGGGCCAAA TAATTTCAAT TCATCCTTAA GGAATCCGGT TCTTACTGCT
ATTACCGCTA CACAGGCAGG AACGTATAAA GCTACTTATA CGGATGCCAA CGGCTGCAAA
ACAACCAGCG ACTTTATTCT TCAGGTATCG AAACCAACGG CAGCAATCAC GGTTTCTGCT
GCTTCATTCT GCCCGGGTGG TTCAGCAGTG CTGACAGCAA GTACAGGGAC AACATACAAA
TGGTTCAAAG GAACAACAGC CCTTGGAACA GCGTCAACAC AAACCGTTAC AGAAGCTGGC
GCCTATACCG TGGAAGTAAC AAATGCGGCA GGCTGTAAGG CAACATCGGC ACCATCAACT
GTAACCCTCA GTACTCCACA GGCAACGCCA ACAATTACAG CAACGGTAAC ATCATTCTGC
CCGGGTGGTT CAGCAGTGCT GACAGCAAGT ACAGGGACAA CATACAAATG GTTCAAAGGA
ACAACAGCCC TTGGAACAGC GTCAACACAA ACCGTTACAG AAGCTGGCGC CTATACCGTG
GAAGTAACAA ATGCGGCAGG CTGTAAGGCA ACATCGGCAC CATCAACTGT AACCCTCAGT
ACTCCACAGG CAACGCCAAC AATTACAGCA ACGGCAACAT CGTTCTGCGC AGGTGGTTCA
GCAGTGCTGA CAGCAAGTAC AGGAACAACA TATAAATGGT TCAAAGGAAC TACAGCGCTT
GGCACAGCGT CAACACAAAC CGTTACGGAA GCGGGCGCCT ATACCGTAGA AGTAACCAAT
GCCTCCGGGT GTAAAGCAAC GTCGGCTGTA ACACAAATAA CACTGAATGC TGCACCGCCG
GCAATCATTA CAGCATCAGC AACATCGTTC TGCGCAGGTG GTTCAGCAGT GCTGACAGCA
AGTACAGGAA CAACATATAA ATGGTTCAAA GGAACTACAG CGCTTGGCAC AGCGTCAACA
CAAACCGTTA CGGAAGCGGG CGCCTATACC GTAGAAGTAA CCAATGCTTC CGGATGTAAA
GCAACGTCGG CTGTAACTCA AATTCTTACT ACGCAACCAT CTGCCTGGTA TGCAGATACT
GATGGCGATG GCAAAGGCGA TCCTGCTGTT ACAATGACGG CATGCACACA ACCTGCCGGC
TATGTAGCCA CAGCCGGCGA TGGCTGTCCG GCCGATGCCG GCAAAATCGC TGCGGGCAAT
TGCGGATGCG GCAATACAGA AACTTCGTGT CTGGATTGTG CGGGTGTTGT TAACGGAATG
GCTGTACTGG ACAACTGCAA CATCTGTGTA GGCGGCAATA CCGGCAAATC AGCCTGCGTA
ACAACGGCAA CAGTAAACGG TTCAGCAGCT AACATTCAAG TGATCCCGCA ACCGTTTGAC
GGTACTACTA CCATCACGGT TTATAACATA GGCATGATCC AATCCATAAC AATCATAAGT
GCTTCCGGAG CTATTGTTGA AACAAGACAG GGATTGAGCA CAGATGAAAT AACAATCGGC
GAATCATTAG CAGCAGGTCT TTATTCGGTG ATTATTACAA CCGAAAATGG CATGTATACT
ACCCGGATCG TAAAAAAGTA A
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| Protein sequence | MKEFYILSTL KRIIFIIFLS GITFQHTFAQ YQMEQLNRGV VAVSMGGTKV FVSWRWLGTE
DNITFNLYRN GTKINSTPLT VSNYTDNAGS TSASYTVKAI VNGVEQAASE AATPWAQKYY
TLPLNVPAGG TTPTGEAYTY SPNDCSVGDV DGDGTLEIVV KWDPSNAKDN SQSGYTGNVY
IDCYTMKGVF LWRIDLGKNI RAGAHYTQFL VYDFDGDGKA EMACKTADGT KDGKGVVIGS
ATADYRNSSG YILSGPEFLT VFNGKTGAAM ATANYTPGRG TVSSWGDNYG NRVDRFIATV
AYLDGQRPSM VFGRGYYTRL VRSAWDFRNG QLTQRWIFDS NASGNGSYAG MGNHQMTVGD
VDGDGRQEVC NGSSAVDNDG KGLYSNGLGH GDALHMSDMD PDRPGQEVWQ CHEEPKKYGN
NGLAFKDAKT GQPIWSLGGG DQGDIGRCMA GDIDPRYKGY EVWGSSGSLY TCKGVAIGTS
KPSVNFGVYW DGDLQRELLD GAKLDEWDYV NNRMNRLATL YDASYGGGTP CNTTKATPNI
SGDLFGDWRE EIILHSADNK NLLIYTTTIP SDYKFRTLLH DPQYRVAIAW QNAAYNQPPH
LSYYLGTDMA TPAKPDITIV GNNTTGCVPA IAVPSTAFCA GGSVLMTATT GTSYKWFNGT
SQVGTAATYT ATTAGNYTVE VTNASGCKAT SIPVTITVNT LPVITPYVKI DANAWTSSST
AAVCEADTVN FGPHPNVASG WSWTGPNNFN SSLRNPVLTA ITATQAGTYK ATYTDANGCK
TTSDFILQVS KPTAAITVSA ASFCPGGSAV LTASTGTTYK WFKGTTALGT ASTQTVTEAG
AYTVEVTNAA GCKATSAPST VTLSTPQATP TITATVTSFC PGGSAVLTAS TGTTYKWFKG
TTALGTASTQ TVTEAGAYTV EVTNAAGCKA TSAPSTVTLS TPQATPTITA TATSFCAGGS
AVLTASTGTT YKWFKGTTAL GTASTQTVTE AGAYTVEVTN ASGCKATSAV TQITLNAAPP
AIITASATSF CAGGSAVLTA STGTTYKWFK GTTALGTAST QTVTEAGAYT VEVTNASGCK
ATSAVTQILT TQPSAWYADT DGDGKGDPAV TMTACTQPAG YVATAGDGCP ADAGKIAAGN
CGCGNTETSC LDCAGVVNGM AVLDNCNICV GGNTGKSACV TTATVNGSAA NIQVIPQPFD
GTTTITVYNI GMIQSITIIS ASGAIVETRQ GLSTDEITIG ESLAAGLYSV IITTENGMYT
TRIVKK
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