| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1138 |
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| Symbol | cyo |
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| ID | 4185193 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 1310489 |
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| End bp | 1312627 |
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| Gene Length | 2139 bp |
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| Protein Length | 712 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638071135 |
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| Product | putative bifunctional cbb3-type cytochrome c oxidase subunit I/II |
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| Protein accession | YP_677753 |
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| Protein GI | 110637546 |
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| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG2993] Cbb3-type cytochrome oxidase, cytochrome c subunit
[COG3278] Cbb3-type cytochrome oxidase, subunit 1 |
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| TIGRFAM ID | [TIGR00780] cytochrome c oxidase, cbb3-type, subunit I
[TIGR00781] cytochrome c oxidase, cbb3-type, subunit II |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00103071 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.843172 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAACA ACACGCTCGA AAAATTTTCC TATGACAATA TAATTGTCAG GAATTTTATT
TTTGCAACAA TGATCTGGGG AGTGATCGGT ATGGTGGTAG GTTTGTTAGC TGCCCTGCAA
CTGGTTTTTC CAGTATTGAA TTTTGCAGAT ATTACTACGT TTGGCCGTAT ACGGCCATTG
CATACAAATG CGGTTATTTT TGCCTTTGTA GGTAATGGTA TTTTTTCCGG TGTATATTAT
TCCTTACAGC GTTTATGTAA AGCACGTATG TTCAGCGATA CCTTAAGCAG GATAAACTTC
TGGGGCTGGC AGCTGATCAT TGTTTCAGCA GTGGCAACCT TACCTTTTGG CATCACAACA
AGTAAAGAAT ATGCCGAGCT GGAATGGCCG ATTGATATTG CAATTACGAT CATCTGGGTT
GTTTTTGGCT GGAACATGTT TGGTACCATT CTTAAAAGAA GACAGCAGCA TTTATATGTA
GCCATCTGGT TTTATATCGG TACGTTTGTA ACCGTTGCCG TACTCCACCT TGTTAACTCG
TTTGAAATTC CGGTAACATT TCTGAAAAGT TATTCCTGGT ATGCAGGTGT ACAAGATGCA
CTGGTGCAAT GGTGGTATGG CCACAATGCT GTTGCATTCT TTTTAACAAC GCCATACTTA
GGGCTTATGT ATTACTTTGT TCCTAAAGCG GCCAACAGAC CCGTTTATTC CTATCGTCTT
TCCATCATTC ACTTCTGGGC ATTGATATTT ATGTATATCT GGGCCGGGCC GCACCACTTG
CTTTATACGG CCTTGCCAGA CTGGGCGCAG ACGTTGGGTG TTGTATTCTC TGTTATGTTG
ATTGCTCCTT CCTGGGGAGG CATGCTCAAT GGGTTACTAA CTTTACGCAG TGTGTGGGAT
AAAGTACGCG TGGAACCGGT ATTGAAATTT TTTGTTGTAG CCATTACAGC TTATGGCATG
GCTACTTTTG AAGGACCTAT GCTTTCTTTA AAAAGTGTAA ATGCAATTGC ACACTATACA
GATTGGATCG TGGCACACGT ACACGTAGGT GCACTTGGCT GGAATGGGTT CTTAACATTT
GGTATGATTT ACTGGCTGAT CCCGCGTATG TATAAAACGG AATTATTCTC AACCAGACTT
GCCAACTTCC ATTTCTGGAT CGGCACCCTT GGTATCCTCT TTTATGCATT GCCGATGTAT
TGGGCCGGCT TTACACAAAG TGCCATGTGG AAAGAATTTA CACAGGATGG CGTATTAGCG
TATCCGAATT TCCTTGAAAC AGTATTGCAG CTTCGTACCA TGTACATGCT TCGCGCATTG
GGTGGTGTGT TTTACCTCAC AGGTGTTATT GTGATGTGTT ATAACATTGC TAAAACAGTA
GCTGCAGCAA CGGTATTTGA GAAAAACGAA GAAGCGGAAG CTCCTGCATT ACCTGCTGTA
TATCACGCAC ACAAAGGTGA TCACTGGCAC CGATGGATCG AACGCAAACC AATACAATTG
ATGTTTTTCA GTTTGATTGT GATTCTGATT GGCGGGATGG TAGAAATGAT TCCGACATTT
CTGGTTAAAT CAAATATTCC TACAATCAGG TCGGTTAAAC CTTATACACC GCTTGAACTC
GAAGGCCGTG ATATTTACAT CCGCGAAGGA TGTAACAACT GCCACTCTCA AATGGTGCGT
CCGTTCCGTT CTGAGACCGT TCGGTATGGC GAGTATTCCA AAGCAGGAGA GTTTGTGTAC
GACCACCCGC ATTTGTGGGG TTCTAAACGT ACCGGTCCGG ATTTACATCG TGTTGGCGGC
AAATATCCAA ACTCCTGGCA TTACAACCAC ATGCTCGATC CAACACTTAC TTCACCGAAT
TCCATCATGC CGGCATATGC TTCGATGTTA GAAAATATAC TGGATATTTC CGATACCGAA
AAAAAGATAG CAGCCATGCG TACACTTGGC GTGCCATATG CGGAAGGATA TGAAAAAAAT
GTTCATGCAG AAATGCGTAT ACAGGCCGAC GCAATTGTGA AAAGCCTGGC TGCAGATAAT
ATTAAAGTGA CCAGGGATAA AGAAATTATT GCAATGATTG CTTACCTGCA GCGCCTTGGT
ACAGATATTA AAGTTAACGA TTCAACTTCA ATCAAATAA
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| Protein sequence | MNNNTLEKFS YDNIIVRNFI FATMIWGVIG MVVGLLAALQ LVFPVLNFAD ITTFGRIRPL
HTNAVIFAFV GNGIFSGVYY SLQRLCKARM FSDTLSRINF WGWQLIIVSA VATLPFGITT
SKEYAELEWP IDIAITIIWV VFGWNMFGTI LKRRQQHLYV AIWFYIGTFV TVAVLHLVNS
FEIPVTFLKS YSWYAGVQDA LVQWWYGHNA VAFFLTTPYL GLMYYFVPKA ANRPVYSYRL
SIIHFWALIF MYIWAGPHHL LYTALPDWAQ TLGVVFSVML IAPSWGGMLN GLLTLRSVWD
KVRVEPVLKF FVVAITAYGM ATFEGPMLSL KSVNAIAHYT DWIVAHVHVG ALGWNGFLTF
GMIYWLIPRM YKTELFSTRL ANFHFWIGTL GILFYALPMY WAGFTQSAMW KEFTQDGVLA
YPNFLETVLQ LRTMYMLRAL GGVFYLTGVI VMCYNIAKTV AAATVFEKNE EAEAPALPAV
YHAHKGDHWH RWIERKPIQL MFFSLIVILI GGMVEMIPTF LVKSNIPTIR SVKPYTPLEL
EGRDIYIREG CNNCHSQMVR PFRSETVRYG EYSKAGEFVY DHPHLWGSKR TGPDLHRVGG
KYPNSWHYNH MLDPTLTSPN SIMPAYASML ENILDISDTE KKIAAMRTLG VPYAEGYEKN
VHAEMRIQAD AIVKSLAADN IKVTRDKEII AMIAYLQRLG TDIKVNDSTS IK
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