Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1135 |
Symbol | uspA |
ID | 4185190 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 1308341 |
End bp | 1309186 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 638071132 |
Product | universal stress protein |
Protein accession | YP_677750 |
Protein GI | 110637543 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.00245865 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTTAGCAA TGATTAGAAA TGTATTAATT CCAGTAGATT TTAGTGATGT TTCAATGAAT GCAATTGAAT ATGTGAAACA TCTGACCCGA AAAATGAGCT GCACGATTTT TTTGTTTCAC AGCAAAAGAA TGATTGTAAC TCCTGATCAG GCTATACAAA CAATGTATAA TGGCATGTTC GATGATGCTG ACGACTTAAA TTTAAATCAG CATATGGATG AACTGGCTGC CGGCCTGGCC AGTGAATACA TTACAGTTAA TAAGGTTATC CGGATCGGTT CTTTAGCCGA AGATATCAGC AATGTTGTAA AAGAACATAA TATAGATTTG ATTGTTTCCG GAACGAATGG AGCAGGCAAT ATTGAAGGAC TGTTTTTGGG AACAAATTCA GTTGGTATAT TTAAGCACGT TACCTGTCCT GTATTGATCA TTCCTTCAAA TTGTAATTTC AGACTTATAA AAAAAATCCT TTACGCTATC GATTTTCAGG AAGGCCATTC AAAAGAATTA AAAAGAGTTT GCAGGTTTGC GGAACTGTTT GATGCAGAAG TAAACGTTAT ATATATAAAT ACAGAAGCAT CTATATACAG CGATGCAAAA GAAAAGCTGG ATCAGCTTGC AGAAATACAT GTCAATGAAA TTAAATACAA TAAAATTTCA TATACTGTAA GCCACGATGA TACGGTATTT GAAGGGCTGG AAAAGGAAAT TGCTTCCGGA TATATTGATG TAATTTGTAT GGCCACAGGT AAAAAAAGTT TTTTAGAAGA ACTGTTTTTT AAAAGCAATA CAAAAGAAAT GGCCTTTCAC ACACGTATAC CTTTACTGGT TGTACATTTA AATTAA
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Protein sequence | MLAMIRNVLI PVDFSDVSMN AIEYVKHLTR KMSCTIFLFH SKRMIVTPDQ AIQTMYNGMF DDADDLNLNQ HMDELAAGLA SEYITVNKVI RIGSLAEDIS NVVKEHNIDL IVSGTNGAGN IEGLFLGTNS VGIFKHVTCP VLIIPSNCNF RLIKKILYAI DFQEGHSKEL KRVCRFAELF DAEVNVIYIN TEASIYSDAK EKLDQLAEIH VNEIKYNKIS YTVSHDDTVF EGLEKEIASG YIDVICMATG KKSFLEELFF KSNTKEMAFH TRIPLLVVHL N
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