| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1067 |
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| Symbol | rcsC |
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| ID | 4185025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 1233016 |
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| End bp | 1235016 |
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| Gene Length | 2001 bp |
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| Protein Length | 666 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638071066 |
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| Product | sensor histidine kinase |
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| Protein accession | YP_677684 |
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| Protein GI | 110637477 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.42028 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTA CCGATAATGC ACGAATCCCT TCTCGATTTA ATCTATCAAA CATTCTTTCA
CAGATGTCTA CCGGAATGGC GATTTTCCAT GGTCCGGAAT ATATAGTGGA ACTCGCTAAT
GAAGCCATAC TTCGTTATTG GAATTTAAAT CAGGTGGATG TACTTGAAAA GCCAGCCTTT
GATGTTTTAA TTCGCCGCGG CGAAACGAAG CCAGATGCTC ACGAATTACA AAAAATAATT
GATGATGTTT ATCATACCGG AAATCGTGCT GTTGTCAACG AGGCATTTGC TGTGTTACCT
GTTGAGAACG CAGCATGTGA TTTTTATTTT AACCTCACGT TCGACGCAGT ACGGGATGAA
AATGGTGACA TCAACGGAAT CATGTGTCTG ATGAATGATA TCACTGAGTC TGTACAGGTC
CGTAAAAAAC TGGAAGCGGC TGAAAAGAAA AAAAGCCTTG CACTGGATGC CGGACTTATC
GGTACCTGGG ATTTTAATCT GCTTGATAAT ACGGTTGAAC TGGACGACCG CTGTCGCGAA
TTATTTAACA TGCCGCCTCA GGAGCACATC AGCCCGCTGG ATTTCTGGAA ATACATTAAC
GAAAAGGATC ATGCTAACGT CACAGCAGCT GTAAGCGCTT CGTTAGATCC GCTGCAGCGG
GCAGATTATA CATTGGAATA CAGAGTAGGA AGTGAAGAAG GGAAAATCCG CTGGATCAGG
AACAAAGGAA AGGGATATTT CAACGGTACT ATTCCCTATC GTTTTGTAGG CACCGCACAG
GATGTTACAG AGGAACACCG TCTCAAAGAC GAGCAGGAAA AATTATTACG TCTGGTAGAC
AATAGTGTTG AACTGATGTC TTTGCTGGGA ACAAATAATA TCAACTCCTA CATCAATAAG
GCAGGCATGG AGTTGCTGGG CTTTGATACC ATGGAGCAGG TTCTCCGTAC ACCTATATCT
GAACTCCATC TGAAAGAGGA TTTTGAAAAA GTAAGTGCCA ATGTTATCAC ATCCTTGCAA
GATAAGGGAA GATGGTCCGG ACAAATGAAT GTCCGGAATT TAAAGTCTGG AGAGGTTATT
CCCGTTTATA ATAATACAGT ACGTATCGAT GATCCGGCGA CAGGAGAAAT ATTAGCTTTT
GGTGCTGTAA TGCGGGATAT GAGACAGGAA CTTGCTGCGC AGCAATCGTT GCTGGAATCC
GAAAGAAAAT ACCGGCAACT TACTAATGAA TTGGAAGAGC GGGTGGATGA ACGCACGGTT
GAGCTCCGCA ATGCGAACTA CAACCTGAGC CGTTCCAATC GTTACCTGGA GCAGTTCGCG
TACATTGCCA GCCATGATTT GCAGGAACCA TTGCGAAAGA TCCGGATCTT CAGCGATTTG
ATTATTGAAA ACAGCAGCGA TGGAGAGCTG GTTGAAAAGT ATATTTCTAA AATCAATGTT
GCCTCGGAGC GTATGTCTTC TTTAGTAAAA GAGCTGCTCA ATTACTCGCG TCTCTCGTCA
CTTCAGCATA CCTTTGAAAC CGTTGATCTG TCTGCCGTAC TTACGCATGT GCTTACCGAC
TGCGAGCTGG TAATCAAAGA AAAGAATGCA GTTATTCAGA CCTGTTCGCT GCCGGTAATA
TATGGGGTTT CCTCACAGCT GTATCAGCTG TTTTTAAATC TGCTGAGCAA TGCGTTGAAG
TTTAGTGAAA TACCACCTGT TGTTTCGATC ACCTGTTCGG AAGTATATGG AAGAGACATC
ATTGGCGGTG AGTTGATTGA TCCGGACATC AGGTATATAC ACCTTATTTT TAAAGATAAC
GGCATAGGGG TTTCAACGGA TTTATTTGAA AAAATATTTA TAATCTTTAC CCGCGGCACC
TCAGATCCTA AATTTACCGG TACTGGTATT GGTCTGGCAG TATGTAAAAA AGTCGTTGAA
AATCACCGGG GCTACATTGA TGTGGAAAGC GAAGTTGGCA AAGGCACCAG CTTTCATGTA
TACCTTCCGT TAAAACAGTG A
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| Protein sequence | MSFTDNARIP SRFNLSNILS QMSTGMAIFH GPEYIVELAN EAILRYWNLN QVDVLEKPAF
DVLIRRGETK PDAHELQKII DDVYHTGNRA VVNEAFAVLP VENAACDFYF NLTFDAVRDE
NGDINGIMCL MNDITESVQV RKKLEAAEKK KSLALDAGLI GTWDFNLLDN TVELDDRCRE
LFNMPPQEHI SPLDFWKYIN EKDHANVTAA VSASLDPLQR ADYTLEYRVG SEEGKIRWIR
NKGKGYFNGT IPYRFVGTAQ DVTEEHRLKD EQEKLLRLVD NSVELMSLLG TNNINSYINK
AGMELLGFDT MEQVLRTPIS ELHLKEDFEK VSANVITSLQ DKGRWSGQMN VRNLKSGEVI
PVYNNTVRID DPATGEILAF GAVMRDMRQE LAAQQSLLES ERKYRQLTNE LEERVDERTV
ELRNANYNLS RSNRYLEQFA YIASHDLQEP LRKIRIFSDL IIENSSDGEL VEKYISKINV
ASERMSSLVK ELLNYSRLSS LQHTFETVDL SAVLTHVLTD CELVIKEKNA VIQTCSLPVI
YGVSSQLYQL FLNLLSNALK FSEIPPVVSI TCSEVYGRDI IGGELIDPDI RYIHLIFKDN
GIGVSTDLFE KIFIIFTRGT SDPKFTGTGI GLAVCKKVVE NHRGYIDVES EVGKGTSFHV
YLPLKQ
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