| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1012 |
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| Symbol | |
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| ID | 4183749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 1160323 |
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| End bp | 1160997 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638071010 |
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| Product | RNA pseudouridylate synthase, small subunit |
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| Protein accession | YP_677629 |
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| Protein GI | 110637422 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 45 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTTTTCT TCGATATTTG TTTAAAAAGG CGCTTTATAT GTATATTTAA TCGCATAAAA
AGTCCTGTAA TGTGTGTTAA AAACCGCTAT TTTATCATTA ATAAACCATT CAATATGGTT
TCGCAATTTA TCAGCTCGGA CGCTGTTAAT CTACTCGGGA ATCTGGATTT TACGTTTCCG
GAAGGCACAC ACGCCGTTGG CAGGCTGGAT AATGAATCGG AAGGTTTATT AATTTTAACC
ACCAATAAAA AAGTTACACG GCTGCTTTTT CAGGGAACAA AAAAACATAC CCGAACGTAT
CTGGTTCTTG TTAAAAATAA GGTTTCAGAA GAAACTCTTA AGCAGTTGCA AACAGGTATT
TCAATACGTG TTAAAGGAGG CGGAAATTAC ATATCCTCTC CATGTGAAGC ATCCATTGTA
ACAGATGCAA AAGCTATTTA CTCCTATGCG GCCGACACAC GGGAAAACTA TCCGCATACC
TGGCTCCTTT TAACGCTGAC AGAAGGAAAA TTTCACCAGG TACGTAAAAT GGTACTGGCT
GTGAACCACC GTTGCCTGCG TCTGATACGG GTTTCCATTG AAAATATGTT ACTGCACGAC
CTGCAGCCCG GCGCAGTAAA GGAATTTGAA GAAGAAACGT TTTTCAGCCT TCTGAATATT
GATTACAACA TTTAA
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| Protein sequence | MLFFDICLKR RFICIFNRIK SPVMCVKNRY FIINKPFNMV SQFISSDAVN LLGNLDFTFP
EGTHAVGRLD NESEGLLILT TNKKVTRLLF QGTKKHTRTY LVLVKNKVSE ETLKQLQTGI
SIRVKGGGNY ISSPCEASIV TDAKAIYSYA ADTRENYPHT WLLLTLTEGK FHQVRKMVLA
VNHRCLRLIR VSIENMLLHD LQPGAVKEFE EETFFSLLNI DYNI
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