| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0854 |
|---|
| Symbol | |
|---|
| ID | 4184213 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 978072 |
|---|
| End bp | 979172 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 638070856 |
|---|
| Product | capsular polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_677477 |
|---|
| Protein GI | 110637270 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4421] Capsular polysaccharide biosynthesis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0933972 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.113997 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTGTCTTC AACGGATCTG TTACGAAAAG ATTTTTTTGA AAAAGAAAAT AATAGCAACT
GGAACAATCT GGATGAGTAA CATGCAGCAA ATAAATAATG CTTCTGTAAG GCCTGTTAGT
GCTTACAATA CAAAGCATCT GCAAATACCT GCAATTGCAT TGCTTCAATC TTCTCCATTG
CCTGAACAGG CCATACGTAC ATTTAGCAGG GCGCTTCTGA CACCAACAAA CCATTTATTC
GTAAATGGCA GATACATTCG CACCGGATTA ATTTCCGGTT TCGATTCAAG AAAGCTTTCT
TTTTTTCAAA GAATATATTT ATTCTTAAAA TCACGATTTT TTACAGAAAA TAAATCAGTT
AAAATTTCAG CAGTATGGGC GCATGATAGC TGGAGTAATA ATTATTTCCA CTGGTTTAAT
GACACGTTGC CTCGATTATT TTTATTGAGT AAACAAATTG AAGACTCGGT TGCGGTATTG
CCTGTTGAAT TAAGTAAGAT CACATTCATT GTTGAATCAT TGGAGTTACT TAAAATTGAA
CATCAATGGA TTGATCAGAA AAAGTCTCAT CGGTTTGAAT CGTTAAGTGT ATTACATACG
GCAACACTTC AGCCTGACAT TAATCCGTTG CTTCAAAAAC AGATGCGCGA CGCTGTTTTT
TCAGCAATGA AAATTGACCC GCAAGAAAGA CCTTTCAGGA AAATATATAT TTCGAGAGCA
CATGCGAGGT ATAGGAAAAT TATAAATGAA CAGGAATTAT TGCCTGTACT GAAAAAATAT
GGATATGATA TTATTTATCC TGAAACATAT TCTTTTAAAG AACAGGTAAA ACTTTTTGCT
GAGTCAAATG CGTTAATTTC TATTCATGGA GCAGGGCATA CAAACTGCAT GTTTATGAAG
CAAGATGCTA AAGTGATGGA AATACGAAAT ACTGAATGGG AGTCGCAGCC ACTTTGCTTC
TGGGGGTTGG CAAATATTTT TGAATTAAAG TGGGAATATA TTACAGCCAC ACGGGTAAGT
GAAGTTTCGA ATTTTAATGA TGTTTTTATA GCTCCACATA TATTTGAAGA ATCGTTACGG
ACATTTGAAA ACATTAAATA A
|
|---|
| Protein sequence | MCLQRICYEK IFLKKKIIAT GTIWMSNMQQ INNASVRPVS AYNTKHLQIP AIALLQSSPL
PEQAIRTFSR ALLTPTNHLF VNGRYIRTGL ISGFDSRKLS FFQRIYLFLK SRFFTENKSV
KISAVWAHDS WSNNYFHWFN DTLPRLFLLS KQIEDSVAVL PVELSKITFI VESLELLKIE
HQWIDQKKSH RFESLSVLHT ATLQPDINPL LQKQMRDAVF SAMKIDPQER PFRKIYISRA
HARYRKIINE QELLPVLKKY GYDIIYPETY SFKEQVKLFA ESNALISIHG AGHTNCMFMK
QDAKVMEIRN TEWESQPLCF WGLANIFELK WEYITATRVS EVSNFNDVFI APHIFEESLR
TFENIK
|
|---|
| |