| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0697 |
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| Symbol | pgdA |
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| ID | 4186472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 795984 |
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| End bp | 796928 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 638070703 |
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| Product | polysaccharide deacetylase-related protein |
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| Protein accession | YP_677324 |
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| Protein GI | 110637117 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.418808 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATTAAAG TACGCATAGT TATAATCACC TTTCTTTTAT GTTGTAGCGC TCAGTCATGG
GCGCAACTTA AATACCTATG CATAACAGTA GATGATTTAC CTACTGTAAC ATATGGAGAT
AATTCAATTC CATTGGATTA CACCATTACG AATGGATTGA TACAAGCATT TAAAAAATAT
CAAATACCAG CAATCGGATA TGTAGTAGAA GGCCAGTTAT ATAAAAACAA TAAACTGGAT
TCAAGTAAAA TTGAATTGCT CAGAATGTGG CTTGATAATG TTTTTGAATT GGGTAATCAT
ACATACTCTC ATCTCGACTA TAATAATGTA CCAGATTCAA TATATTTTAA GGATATTTTA
AAAGGCGGAT TAATCACGAG TGAACTGCTT AAAAGATATA AGGACACCTT AAAATATTTT
AGGCACCCTT ATCTACACAC TGGTATTACA GCGCAAAAGA GTGATATTTT GGCCGAATTT
CTAGTGATGA ATCAGTATGT AGTATCTCCG GTAACTATTG ATAATGATGA TTACCTTTTT
GCTAAAGCAT ACCACAAGGC ATATGCACAA AAAAATGATA GTTTAAAGAA ATATATTGGC
CGGTCTTATT TAGAATACAT GGAGAAAAAA CTTATTTATT TTGAACAGAA ATCGCAGGAG
GTTTTTCACA GGAGGATTAC ACAAACGCTA TTGATTCATG CAAGCTTAAT TAATTCAGAT
TATATGGATG AATTGGCCGC TATGTATCAA CGCAATGGTT ATACTTTTGT TTCCCAGTCT
AAAGCCTTGG AAGATAAAGC ATATCAAGAG CCAATAACTG TTTATAGCAG GAAAGGTCTT
TCCTGGATAT TTCGTTGTGG TTTGAGCAGA GGACTGAGTA ATGAATTACT TACTGGAGAT
ATTGAAACTC CAAACATTAT TGTAAATATG GCTAATGATA AATAA
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| Protein sequence | MIKVRIVIIT FLLCCSAQSW AQLKYLCITV DDLPTVTYGD NSIPLDYTIT NGLIQAFKKY
QIPAIGYVVE GQLYKNNKLD SSKIELLRMW LDNVFELGNH TYSHLDYNNV PDSIYFKDIL
KGGLITSELL KRYKDTLKYF RHPYLHTGIT AQKSDILAEF LVMNQYVVSP VTIDNDDYLF
AKAYHKAYAQ KNDSLKKYIG RSYLEYMEKK LIYFEQKSQE VFHRRITQTL LIHASLINSD
YMDELAAMYQ RNGYTFVSQS KALEDKAYQE PITVYSRKGL SWIFRCGLSR GLSNELLTGD
IETPNIIVNM ANDK
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