Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_0693 |
Symbol | def |
ID | 4186468 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 792130 |
End bp | 792684 |
Gene Length | 555 bp |
Protein Length | 184 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638070699 |
Product | peptide deformylase |
Protein accession | YP_677320 |
Protein GI | 110637113 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTTATC CGATTGTGGC ATACGGGGAT CCTGTGTTGA AGAAAGTTGC CCAAGACATT GAAAAAGGAA GCCTGGATGT TGTCAAGATG TCTGCAGACA TGTTTGAAAC AATGGAAAAC GCGCATGGCG TTGGCCTTGC TGCGCCTCAG GTTGCATTAA ACCTACGCAT GTTTGTTATT GATACTTCCG TTTTCGACGA TGAAAAAATA ACTCCTGTTC GTAAAACATT TATAAATCCG GTTATTGAAG AAGAGTGGGG CGATGAATGG CCGTATGAAG AAGGTTGCCT GAGTATTCCC GGGGTACGTG CAGACGTATA TCGTCCGGCG AATCTTCGGA TCCGTTATTT CGATACCGAT TGGAAAGAAC ATGTGGAAGA ATTTGACGGC ATGACAGCCC GTGTGATCCA ACATGAATAC GATCACATTG AAGGCGTATT GTTTGTCGAC CATTTATCTT CGATCAAAAA ACGGTTATTA AAAGGGAAAC TAACCAACAT CAGTAAAGGC GATTGCGACG CATCGTATCG TATGAAATTC CCGATTAAAA AATAA
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Protein sequence | MIYPIVAYGD PVLKKVAQDI EKGSLDVVKM SADMFETMEN AHGVGLAAPQ VALNLRMFVI DTSVFDDEKI TPVRKTFINP VIEEEWGDEW PYEEGCLSIP GVRADVYRPA NLRIRYFDTD WKEHVEEFDG MTARVIQHEY DHIEGVLFVD HLSSIKKRLL KGKLTNISKG DCDASYRMKF PIKK
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