Gene CHU_0562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_0562 
Symbolpys 
ID4184048 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp655761 
End bp657191 
Gene Length1431 bp 
Protein Length476 aa 
Translation table11 
GC content46% 
IMG OID638070567 
Productphytoene dehydrogenase 
Protein accessionYP_677189 
Protein GI110636982 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1233] Phytoene dehydrogenase and related proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.57864 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAATA TATATGATGC AGTAGTTGTC GGATCCGGCC CCAACGGTCT GGCAGCAGCC 
ATTACACTCC AACGGAAAGG ATTTGCTGTG TTGGTGCTGG AAGCAAAAGA TACCATCGGC
GGTGGTTTAC GTACGAAAGA GCTCACGTTA CCTGGGTTTA AGCACGACGT GTGTTCTGCT
ATACATCCGA TGGCAGTTGC TTCTCCGTTC TTTGCGGATA TACCGCTGGA TAAATTCGGG
TTGCGGTTTA CACATGCGCC TATTGCTGCG GCACATCCCT TTGATCATGG CGGAGCAGCC
ATTCTTTCGC GTTCGCTAAA AGATACAATC GCGTTGCTGG GTAAAGATGC AGATAATTAC
AAACGGTTAA TAGAGCCTGT TATAGAAAGC TGGCCCGATA TTGCTGCAGA CGCTATGGGG
CCGTTACGGT TTCCCAAACA TCCGTTGAAG ATGGCCGCGT TTGGATTAAA TGCGATCCGC
TCTGCAGATT GTATATCCAA ACGCTTCGAA ACCGAAGAAG CAAAAGGGTT GTGGGCAGGC
ATGGCAGCAC ATTCCATACA ACCGTTGACC AATTGGGCTT CGGCTGCAAT CGGTTTGGTA
CTTTCTGCGG TTGGCCATTT GCATGGCTGG CCAATACCTA TCGGCGGTTC ACAGGCTATT
GCAGATGCAT TGGGTTCGTA TTTTATTTCA CTTGGTGGTA CCATTCAGAC AAATGTTGAA
GTGACTTCTC TCAATCAGCT GCCGGCAGCC AGGGCTGTAC TGTTTGATGT TACTCCCAAA
CAACTATTGA AAATTACCGG CGATGAATTC TCCGGTTTGT ATAAAAAACA ACTAACGAAT
TACCGTTACG GTATGGGCGT GTTTAAAGTA GACTGGGCAC TCAGCGAACC TGTTCCGTTT
ACATCCGATC ATTGCAGGCA GGCAGGTACC GTGCATCTTG GCAATACATT CAACGAAATT
GCCTTGAGTG AACAGGAGAC ATCTTCCGGT AAACATCCGG AAAAACCATT TGTGTTATTT
GCGCAGCAAA GCAAATTTGA TATAACGCGT GCCCCCCAGG GTAAGCATAC TGCCTGGGCA
TATTGCCACG TACCTAATGG TTCCGCAACA GATATGACAG CTGCGATTGA AAATCAGCTT
GAACGTTTTG CACCGGGATT TAAAGATACT ATTCTGGCAA AAAATACCAT GAACACCGTA
GAGATACAGG CATACAATCC CAATTATATT GGCGGTGATA TCAATGGCGG TATCATTGAC
ATTCGTCAGT TGTATACACG GCCCGCAGTG AAAATTTCAC CTTACAGAAC ACCTAAGAAA
GGTATTTATA TATGTTCATC TTCTACACCT CCCGGTGGCG GTGTACACGG TATGTGCGGC
TTTCATGCTG CGCAGGCTGT TATACAGGAT CTTAAAAAAC AATACAAGTA G
 
Protein sequence
MSNIYDAVVV GSGPNGLAAA ITLQRKGFAV LVLEAKDTIG GGLRTKELTL PGFKHDVCSA 
IHPMAVASPF FADIPLDKFG LRFTHAPIAA AHPFDHGGAA ILSRSLKDTI ALLGKDADNY
KRLIEPVIES WPDIAADAMG PLRFPKHPLK MAAFGLNAIR SADCISKRFE TEEAKGLWAG
MAAHSIQPLT NWASAAIGLV LSAVGHLHGW PIPIGGSQAI ADALGSYFIS LGGTIQTNVE
VTSLNQLPAA RAVLFDVTPK QLLKITGDEF SGLYKKQLTN YRYGMGVFKV DWALSEPVPF
TSDHCRQAGT VHLGNTFNEI ALSEQETSSG KHPEKPFVLF AQQSKFDITR APQGKHTAWA
YCHVPNGSAT DMTAAIENQL ERFAPGFKDT ILAKNTMNTV EIQAYNPNYI GGDINGGIID
IRQLYTRPAV KISPYRTPKK GIYICSSSTP PGGGVHGMCG FHAAQAVIQD LKKQYK