| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0553 |
|---|
| Symbol | ragA |
|---|
| ID | 4186184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 643120 |
|---|
| End bp | 646179 |
|---|
| Gene Length | 3060 bp |
|---|
| Protein Length | 1019 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638070558 |
|---|
| Product | tonB-dependent outer membrane receptor |
|---|
| Protein accession | YP_677180 |
|---|
| Protein GI | 110636973 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00261689 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.358258 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC TAGACAGATT ATTGAATACA CATGTATGTG TTGCATTGTT TTTTATGGTT
GGATTTCAAT GGACAGCATT TTCACAAACA ACATTAAAAG GAACTGTAAC AGATGAAGCA
GGTGTAGAAT CAATCATAGG CGCTATTGTT CAGGTAAAAG GAACAAACAC CGGCACAGCA
ACAGACATTG ACGGAAACTA TGCATTACAG ATTGACACAT TCCCCAGTAC GATTGTAATT
TCTTCTGTTG GCTACATCAC ACGGGAGATT GCGCTGGCAA CACCAACAAC ACAGTTAAAC
ATTACAATGA TTGTAGATCA GGAAGAAGAA GAAATTGTAA TTGTTGGTTA TGGAGAGCAG
ACAAAACACG ATCTGGTTGG AGCCGTTTCT AAAATAGATC CTGCGGAAAC AAAAACAATT
CCTGCCGGAA GTTTCGATGC ACAGCTTCAA GGTAAGGCTA CGGGTGTTCA GATAGCAACC
AATTCAGGAG TACCCGGTTC GGATGTGTTT ATACGCGTGC GTGGGGCAAC CTCCATCAAT
GCCAGTAATG ATCCGCTTTA CATTATAGAC GGGGTGTTTG TAAACAATCA GAGTTTACAG
AATACAACGG CAAACGGTCT TGCACAGGAT CGTGCAACTT CACCAATGGC AGATATCAAC
CCGAATGATA TTGAAAGTAT TGAAGTATTG AAAGATGCGA GTGCTGTTGC GATCTATGGT
TCAAGAGGCG CAAACGGTGT TGTTATTGTA ACAACGAAAC GTGGAACATG GGGAGCAGAA
AAAGTTAAAA TTAATTTTAA TGCATCTGAA GGCTTAACGT GGGCACCCAA AGGAAGAATC
TGGAAAACAG CAACAGGTCC GGAACAAGCC ATGCTACTGA ATGAATATAA CCGCAACATG
GGATTGGCAG AGCCTTTCAG ACCGAAAGAC CAGATTGTGA ATGGTGTTGC CGGACGTGGT
TTGCCGCAGG ATCAGCCAAC ATACGACCGG TTAAGTTATC TGTACCAGAC AGGGCATATC
CGTAATTATG ATTTGTCTTT TGCAGGAGGA TCAAACACAA CAAGATATTA TATAGGTGCC
GGCTACAATT ATCAGGATGC TGTATGGAAG CCAATGGACT TTCAACGGCA GGCGCTGAAG
TTTAACCTGG ATCAGAAAAT AGGCAGAAGA GTAACTGTCG GGATCAGCAA TACCTTTACG
CGTGTGTACA GAGATCAGGC TCGTCCGGCC AATGGCGGGA ATGGTACATT GCTGCAGGCG
TCATTGAGTA TACCGGCTTA CCTGCCGATT TTTGATGACA ATGGCACGCC CCTTAAATGG
GTAAACTTTG ATAACATTTA TACATTAACA AGTAAAGTAA ATTTATGGTC AACAAGTTAT
CATTACATAG GTAACCTGTA CGCGGATTGG GAAATTATTA AAAATTTAAA ATTTCATACC
AGTACCAGTT TAGATTATAA TTTATATGAT GAAAAGCAAT ACTGGCAGAA GAGTACACAG
CTTGGTGTTG CGGGCGGATT AGGCTCCAAT AGCATTACGC AGTCTACACA GGTAATGAAT
GAGCAAACCT TACGCTATAA TACAACATTT GCGAGACGTC ATAACGTAGG TGCTTTGGTA
GGAAACACGT TGCAATCCGT TGTACTTACA AACGTAACAG CAAACGGACA AGGTTTCCCG
AATGATTCGT ACACACAAAT TTCTGCTGCA TCCATACAGA CAGGCTCTCA GTACAAAACG
AATAATACCT TAGCCTCATT TTTCTCAAGA GTCGACTACA ACTACAACCA CAAATATTAC
CTTGAATTAA CAGGGAGAGC AGATGGTTCA TCCCGTTTCG GTGAAAATAA TAAATGGGGA
TTCTTCCCGG CAGTAGGAAC AGCCTGGCGG ATCAATAAAG AGAATTTTAT GGCGGATGTA
AAACCCATCA GTAATCTGAA GTGGAGAACG AGTTATGGTA TAACCGGTAA CCAGGCAGGC
ATCAATGATT TTGCGTCACG TGGACTATGG AATGCAGGTT ATGGCTATTC AGATAAACCC
GGAGTATCCG AAGGACCGGG CACAGCGCCT TTTCAGGCTG CCAACCCCGA TCTTAAATGG
GAACGTACCG CACAATTCAG TACAGGTATA GAGATTGGTT TATTTAAAGA CCGTATCAAC
ATTGAAGCCA ATTATTATAA TAAGTATACA ACAAATTTAT TGTTGAATTT ACCTGTACCA
TCGTCTACCG GTTTTACATC CTATACTGCG AATGCAGGTG CGGTAAGAAA TAAAGGGTTT
GAATTGGGTA TTCAAACGGT AAACATCGAA AATAAAAATT TTACATGGAC AACGGAACTG
ACTGTTTCAC GAAATAAAAA TAAAGTCGAA AAGCTTCCTA ATACGGTACA AGGATTTGAT
ACACGTAATT TAACAAGTAT ACAGGAAGGT TATTCACTTT ATTCCTATTG GGTATACAAT
CAAACCGGTG TTAATTCCCA AACAGGCGCC ATTGAAATTG AAGATGTAAA TAAAGATGGA
AAAATAACAA CCGCTGACCG TAAAATTATG GGCAGCGTGT TCCCCAAATT ATTTGGTGGT
TTCAATAATA AATTTACATA CAAAGGAATT GACCTGGGTA TCTTCTTCAT TTATTCGTAT
GGAAATAAAA CCTGGAACCA GAACGAAGCA TTGGGTGAAC AGGGCGGAAC ATTGGGCGAT
AACAGAGTAT TGATGGCAGG TCAGTTAGAC CGCTGGACTA CGCCTGGTCA GGAAACAATG
GTTCCTAAAT TGACAGCGGC CAACTATCAA TATTTTGAAG TAAGCCGTTT TTTAGAAGAT
GCATCATTCA TAAGACTGCG TTCTCTAACG CTTGGTTATA CACTGCCTAA GAAATGGAGC
TCTGCAGTAA AAACGGAAAA GATCCGCTTC TATTTCACAG GTACAAATTT ATTGCTGATC
ACTAAATATA CAGGTTCCGA TCCGGAATCA AATTTAGGTC AGGGCAACCT TCAGGGCTAT
GATTATGATA CGCCTCCACA GCCACGTACC ATTCAATTTG GTTTAAACTT AACGCTTTAA
|
|---|
| Protein sequence | MKKLDRLLNT HVCVALFFMV GFQWTAFSQT TLKGTVTDEA GVESIIGAIV QVKGTNTGTA
TDIDGNYALQ IDTFPSTIVI SSVGYITREI ALATPTTQLN ITMIVDQEEE EIVIVGYGEQ
TKHDLVGAVS KIDPAETKTI PAGSFDAQLQ GKATGVQIAT NSGVPGSDVF IRVRGATSIN
ASNDPLYIID GVFVNNQSLQ NTTANGLAQD RATSPMADIN PNDIESIEVL KDASAVAIYG
SRGANGVVIV TTKRGTWGAE KVKINFNASE GLTWAPKGRI WKTATGPEQA MLLNEYNRNM
GLAEPFRPKD QIVNGVAGRG LPQDQPTYDR LSYLYQTGHI RNYDLSFAGG SNTTRYYIGA
GYNYQDAVWK PMDFQRQALK FNLDQKIGRR VTVGISNTFT RVYRDQARPA NGGNGTLLQA
SLSIPAYLPI FDDNGTPLKW VNFDNIYTLT SKVNLWSTSY HYIGNLYADW EIIKNLKFHT
STSLDYNLYD EKQYWQKSTQ LGVAGGLGSN SITQSTQVMN EQTLRYNTTF ARRHNVGALV
GNTLQSVVLT NVTANGQGFP NDSYTQISAA SIQTGSQYKT NNTLASFFSR VDYNYNHKYY
LELTGRADGS SRFGENNKWG FFPAVGTAWR INKENFMADV KPISNLKWRT SYGITGNQAG
INDFASRGLW NAGYGYSDKP GVSEGPGTAP FQAANPDLKW ERTAQFSTGI EIGLFKDRIN
IEANYYNKYT TNLLLNLPVP SSTGFTSYTA NAGAVRNKGF ELGIQTVNIE NKNFTWTTEL
TVSRNKNKVE KLPNTVQGFD TRNLTSIQEG YSLYSYWVYN QTGVNSQTGA IEIEDVNKDG
KITTADRKIM GSVFPKLFGG FNNKFTYKGI DLGIFFIYSY GNKTWNQNEA LGEQGGTLGD
NRVLMAGQLD RWTTPGQETM VPKLTAANYQ YFEVSRFLED ASFIRLRSLT LGYTLPKKWS
SAVKTEKIRF YFTGTNLLLI TKYTGSDPES NLGQGNLQGY DYDTPPQPRT IQFGLNLTL
|
|---|
| |