| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0543 |
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| Symbol | |
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| ID | 4186174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 628842 |
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| End bp | 629426 |
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| Gene Length | 585 bp |
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| Protein Length | 194 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638070548 |
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| Product | RNA polymerase, ECF-type sigma factor |
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| Protein accession | YP_677170 |
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| Protein GI | 110636963 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.0552939 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGAAAACAG ATGCAGAACT TATTGCCGGA TTAAAAAGCA ACGATCGGAG ATTGTATGCT
GAATTCGTTG GTGCATTCGC ATCGCGTGTA TACAATGTAG CTTTTAATAT TCTGCACCGG
AAAGAAGATG CGGAAGAAGT AGCACAGGAT GTATTCATTA AAGTATTTCA ATCCATTGAT
TCTTTTGATG GCTCCTGTAC ATTAAAAACG TGGATGTACC GTATTACAGT AAACAAATCG
CTTGATGCGC TTCGTGCAAA AAAACGAAAA ACACCCTGGT CCGTTTTCGT GCATTTATTT
ACCGGAGAAG GAGAGGGAAA CAAGGCTATT GTTGCTGTTG AGCCTGTACA TCCCGGTATT
CAATTAGAAC AGAAAGAAGA AGCCGAAATT CTTTTATCTG TGATTGAAAA ATTACCTGAA
CGGCAAAAAG CAGTTTTTGT ACTCTATCAA TTTGAAGACA TGAGTTACAA AGAAATTGCT
TCCACATTGG AGATAAGCGT TTCGGCCGTA GATTCTTTAA TGAGCAGAGC AAAAAAACAA
TTACGTGAAC AATTAAATTC CCTGATGTAT GGATCCATTA GATGA
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| Protein sequence | MKTDAELIAG LKSNDRRLYA EFVGAFASRV YNVAFNILHR KEDAEEVAQD VFIKVFQSID
SFDGSCTLKT WMYRITVNKS LDALRAKKRK TPWSVFVHLF TGEGEGNKAI VAVEPVHPGI
QLEQKEEAEI LLSVIEKLPE RQKAVFVLYQ FEDMSYKEIA STLEISVSAV DSLMSRAKKQ
LREQLNSLMY GSIR
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