| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0528 |
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| Symbol | |
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| ID | 4185158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 604597 |
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| End bp | 608826 |
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| Gene Length | 4230 bp |
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| Protein Length | 1409 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638070533 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_677155 |
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| Protein GI | 110636948 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4995] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.987709 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00608589 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGATGCGTA TCTACAACAT TCTACTAACT GCTTTACTGG GATTTTTCAT GCTGCCTGAA
AGTGCGGCTC AGAAAAGCAC ATTTGAAGCA GACTTTACAC AGCTTGCGGT ATTTTCAGAA
CAGGCAGATT ATAAAGCTGG ATATTTTTAT GCTAAAAAAA CGCATGCCGC AATTGCAAAT
AAACCGCATG CACAGGACAT TGATCTGCTG CGCAGCAACT GCTATCTGGC GCTTTTTGCA
GACCGGCTGG ATAAACAATC TGAAGTAGCA ACTGCCCGCA CAGAGATTCA GAAATTTCTG
CCGGCTTTAT CAGAAGCTAC CAACGTAAGC CGCCTGGCTG AAACCTTTAG TGTATACTGC
GATTTTTATT TTCAGCGTGG TGTGTATACA AAAACAGATT CCGTGTATAC ATCTATAAAA
AATCTGATCC CGCTGCTTCC GCCTTACGAC AGGGAGCTGA TCCGTTATTA TCAGTATGAA
TCGTTATTTC ACAAAGGCTT TTTAAATAAA GTAACCGCCG AAACGGAATT TTATAAAAAT
AGTGTTGCAG CACGATTGAT CAAAGATTCG GTTTTTACTG CAGAAGGAAG CATGCAGCTG
ATAGAGCTGA ATGAAAGTGA AAAAACCGTA CGGGAAAATT TAACCGCAGA TTACATCTTA
TTAAAAGCTC AGGCCTACTT AGAGAACGGA CTTTCCGATT CCGCCATTGC CTATCTGCAA
AAAAACAGTT CCGCGATCAG CAACAAAGAA GGTAACAAAG CCCGTTATCA TTATCTGCTG
GCGCAATGCC AGCAGAACAA TCTCGAATAT CATCTGGCAG AAAAAGAATT TAAAACAGCC
TCCGCGCTTT CACAACAGTT CTTTCAGCCG CACGCTCCAA TACAGATCAG CATTCTGCAA
GGCTTGATCA ATGTGTTGGT TAGCCAGGGA AAAACGGAAG AAGCAGATTA TTACAGAAAT
GATATTGTGG TGCGTTTATA CAGTTACTAC AATAAAAATA ATCTGGGTTA TCTTGCCAAT
ACGTATCCTG CCGTTGAACG TGAAATGGAT GTAAAGAACT GGGCAAAGGC AGAAACAATC
GCAACGGATT TTTTAAACCG CAACGCATTG CCGCCCGTAC ACAGCATGCG TGAAAAATAC
CTGACGGCTT TATTTACCAT TCTGGTAAAA CAACAGAAAT ATGCTGAAGC AGAAAGTACA
ATGGAACAAA TGCTTGCGCT TCAGGCACAG CTCACCGGAG AAAAATCACC GGCTTATCAG
ATATTGTTAT TAGATAAAGC GCGGTTCTAT TCCTTCAATC TGGATAAATT TAAAGAGGCA
AAAATAATTT TTTCCAGCGT GCTTGATTCT GATTTTCAAA ATCAGGTATC TATTGAAAAT
CCGGATTACT ATTTAAATAC ACTGGCATTT TCAAATGTGT ATGTCTATAC GGAAGAATTT
GGGATGGCAG ATAACAGACT TTTGTTAAAC CTGAAACGTG TTGAAAATAC ATTTTCAGCT
ACACACACCT TATATGCCAT CTTCCTTTCT CATGCAGGAG AATTGAAAAC CATTACCGGT
GATTATACCG GCGCGGCAGA AAAAATAGCA GGCAGTCTTT CCATTTTTGA GAAGAACAAT
AAAAAGAAAT ATTCGCGTGC CTGGATTGAA GCGCTTGAGC TGGACATGAA ACTGCAGCTG
CTGCAGGGAG ATTATATCGG CGCAGATGAA TCGTTAAAAA AATCTAAAAA AATTGCAGAT
CGTGTAAACA TCACTGAAAA CGACGATATT TTTCTTGTGG AAGAAATCGG TTTGCTCTAT
GTTAAAAAGG GTGAATATCA GAAAGGAAGT AAAATACTTT CTGCCATTTT AAAATATAAA
ACTGAAACCG TTGGCGGCAC ACACAAAAGT ATCTGCGCCA CGTTAAATTA TTTAGGCGAA
CAGAATCTGA TTGTAGGAAA TTATGCAGAA TCTGACGCGT ATTTCAACCG CTCCCTGCAG
ATCAGTAAAA ATGTGTACGG CAATAAATCC ATACCGTACG CAACCAGTCT GTTATACTAC
AAGCAACTGT ATACAGCTAT CGGTGATTAT GAAAAAGCTG AATCCTCCAT TCTTGAAGCG
CTGCAGATCT ACGCTAAAAC CTACGGAGAT AAAAATATCA AAACCGGTAT TTTAATGCAC
GAAGCAGCAC TTGCTACGTT TCAAGCGGAT TTATATACAA GCAGAAAAAA CAAAACAAAA
CCAGCTGATC TGGATAAACA GTTTGTAAAA GCGCTGGAGA TCATCCGGAA CAGCGCCGGC
GATAACTCTA CCCTATATGC TGAAGGACTT GAGAACTACG CAATCTTCCT TGCATTAACC
AATCAGTACA CCGCTGCATT AGCAAACATT GATGTTGCTA AAAAAATCTG GGAAAATAAA
TCAGGAAAAA ACAATATTCA TACGGCACAG TTGAATAATT TATCCGGAAA GATTTTTTAC
CGTTCAGGAA AATATGCGGC GGCACTTACT GCGTTTGAAA AAACGCGCGA TGAATACAAA
GCCATTTTCG ATGACAATCA CCCGGGTTAT GTATTTGCGC TGGGAAGCTG CGCGCAGATG
TATTACATCT TAGGCAATAC ATCTAAAGCC ATTGAAAACA TTGAAGAGTG TACAAACAAA
TCCTTGCTTT ACATTGACAA AGTATTTCCT TTTTTAAGTG AACGGGGGAA AATGGCATAT
TGGGATAAAA TAAAAGAAGA TTTTGAATTC TATAAAACAA TTGCTTTTAC AAACAGCAAA
GCATATCCTG AAATGATCGG TAAGATCATG AACATTCAGC TTCAGACGAA ATCTGTTTTA
TTGAACTCTC AGCTTAAAAT AAAAAACAAA ATCTATGCAA GCGGTGATAC TACGGCGATA
CGCCTGTATC AAACCTGGCA GGATTTACGC GACAACCTGG CAATCGGCTA TTCAATGAAT
GCAGCTCAGC GTAAGGAAGA AGGCATTGAT ATTGCCGTGA TGGAAACAAA GCTGGAAATG
ATCGAAAAAC AGCTGAGTGC AATTTCAGAA GATTTTACAG AACAAAATAA ATCCAAAGCA
ATTTCCTATA CATGGAAAGC CGTAAAGCAA AATTTACAGG ACAATGAAAT TGCAATAGAA
GTTATCCCTT TCAGATATTA TACAAAATCA TTCAGCGATA CTACCTGGTA TGCGTTTGTT
TCCGTAAGTA ATAAATCAAG TAATCCGTCT TTTGTGATTG AAGAAAACGG AAAAGAGCTG
GAAACAAAAT TCCTGAAGTA TTACAGGAAC ATGATTAAAT TCAGCAAAGA AGATGATTTA
TCCTACAGGC AATACTGGAA GCCGGTTTCA GCCTTATTGA GTACGGATAC TAAAACCATT
TATTTTGCCG GCGATGGTGT ATATAACCAG ATCAACCTGG AGACATTAAA AGATGAACAG
GGGAATTACC TGATCAATTC TACCAACATC ATTTACATAG GTTCATGCCG GGATATTATC
AATAAAAATG TTGTTCACGT TAAAGCTGCA AAAACAGAAA CCGTTCAGCA GCCTGAAATT
GACCTGATCG GTAACCCCAC GTATTTCACC ACAAGCAAAG CCGATGATTC AGAACTGGAA
CAATTACCGG GGTCTGAAAC AGAAGTAAAG AAGATCAACA CACTGATGTC TGCCAATAAA
TGGAAAACGG TAATGTACAT TGGAAAAAAT GCCACAGAGG ACACGGTAAA GAATATTAAA
AATCCAAATG TGCTGCATAT TTCAACACAC GGTTTTTTCT GGCAGGATAA TGTTGAGTCA
GCAAATGCCA TTTCGGAAAA GAGTGTGGTA AATCCGCTCC TGCTTTCCGG TGTAGTGCTG
TTTAACGGTG GCGAGCTGTT AACTACAGAC AATTTCAATG CTATTAATAT GGAAGATGGT
ATCCTTACAG CATATGAAGC AATGAATCTT TCGCTGGATA AAACAGAACT GGTTGTGCTG
AGTGCCTGTG AAACCGGGCT GGGTGAAGTA AAAGTAGGCG AAGGTGTGTA TGGTCTGCAG
CGTTCGTTTA CGGTAGCAGG CGCCAAATCA ATCATTATGA GTTTGTCAAA AGTTTCGGAT
GAGGTAACCA TAAAACTGAT GGAAAACTTT TACACCTACT GGCTGCAGTC AGGAAATAAA
CGGGCAGCAT TCAGCAAGGC TAAAATTGAA TTGATGAAAG AATATCCCGA TCCGAAATAC
TGGGGCGCGT TTATAATGAT TGGACTTTGA
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| Protein sequence | MMRIYNILLT ALLGFFMLPE SAAQKSTFEA DFTQLAVFSE QADYKAGYFY AKKTHAAIAN
KPHAQDIDLL RSNCYLALFA DRLDKQSEVA TARTEIQKFL PALSEATNVS RLAETFSVYC
DFYFQRGVYT KTDSVYTSIK NLIPLLPPYD RELIRYYQYE SLFHKGFLNK VTAETEFYKN
SVAARLIKDS VFTAEGSMQL IELNESEKTV RENLTADYIL LKAQAYLENG LSDSAIAYLQ
KNSSAISNKE GNKARYHYLL AQCQQNNLEY HLAEKEFKTA SALSQQFFQP HAPIQISILQ
GLINVLVSQG KTEEADYYRN DIVVRLYSYY NKNNLGYLAN TYPAVEREMD VKNWAKAETI
ATDFLNRNAL PPVHSMREKY LTALFTILVK QQKYAEAEST MEQMLALQAQ LTGEKSPAYQ
ILLLDKARFY SFNLDKFKEA KIIFSSVLDS DFQNQVSIEN PDYYLNTLAF SNVYVYTEEF
GMADNRLLLN LKRVENTFSA THTLYAIFLS HAGELKTITG DYTGAAEKIA GSLSIFEKNN
KKKYSRAWIE ALELDMKLQL LQGDYIGADE SLKKSKKIAD RVNITENDDI FLVEEIGLLY
VKKGEYQKGS KILSAILKYK TETVGGTHKS ICATLNYLGE QNLIVGNYAE SDAYFNRSLQ
ISKNVYGNKS IPYATSLLYY KQLYTAIGDY EKAESSILEA LQIYAKTYGD KNIKTGILMH
EAALATFQAD LYTSRKNKTK PADLDKQFVK ALEIIRNSAG DNSTLYAEGL ENYAIFLALT
NQYTAALANI DVAKKIWENK SGKNNIHTAQ LNNLSGKIFY RSGKYAAALT AFEKTRDEYK
AIFDDNHPGY VFALGSCAQM YYILGNTSKA IENIEECTNK SLLYIDKVFP FLSERGKMAY
WDKIKEDFEF YKTIAFTNSK AYPEMIGKIM NIQLQTKSVL LNSQLKIKNK IYASGDTTAI
RLYQTWQDLR DNLAIGYSMN AAQRKEEGID IAVMETKLEM IEKQLSAISE DFTEQNKSKA
ISYTWKAVKQ NLQDNEIAIE VIPFRYYTKS FSDTTWYAFV SVSNKSSNPS FVIEENGKEL
ETKFLKYYRN MIKFSKEDDL SYRQYWKPVS ALLSTDTKTI YFAGDGVYNQ INLETLKDEQ
GNYLINSTNI IYIGSCRDII NKNVVHVKAA KTETVQQPEI DLIGNPTYFT TSKADDSELE
QLPGSETEVK KINTLMSANK WKTVMYIGKN ATEDTVKNIK NPNVLHISTH GFFWQDNVES
ANAISEKSVV NPLLLSGVVL FNGGELLTTD NFNAINMEDG ILTAYEAMNL SLDKTELVVL
SACETGLGEV KVGEGVYGLQ RSFTVAGAKS IIMSLSKVSD EVTIKLMENF YTYWLQSGNK
RAAFSKAKIE LMKEYPDPKY WGAFIMIGL
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