| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0462 |
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| Symbol | rnr |
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| ID | 4186329 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 542562 |
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| End bp | 544814 |
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| Gene Length | 2253 bp |
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| Protein Length | 750 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638070469 |
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| Product | exoribonuclease II |
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| Protein accession | YP_677091 |
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| Protein GI | 110636884 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAAAAA AAACAACAAC AACAGAACAA AGCGACACAA AAGGCGGAGA AAGCCTTAGA
TCAAAAACAA CCAAATTTTT TAATAACAGC AGAAAGAATC CTTTCAGCTA TAAAGAATTA
ATCAAAAAAC TTCATCTCGT TCGCGATAAA GATAAAAAAG CACTGAAAGA TGTGCTCGAA
GATCTTGTAC GTGAGGGTAT ACTTGCAAAA GATAAAAGTG GCCTGTATAG TAATGCCGGC
AGCAGCGGCG GCGAAAGTCT GGTCACGGGT CGTGTTGATT TTGTCAACGC GCGTTTCGCT
TACGTAATTC CTGAAGGAGA AAAAGCAGAC AACGACATCT GGATCAGCAG CAATAAAATG
AGCGGCGCAC TTGATGGTGA TATTGTACGG GTAGCTGTTT ATAAAAAAAG CGGCGGCGGC
AATAAAGGTA CAAAAAGTGC TGAAGGTGAA ATTGTAGAAA TTGTAGAACG CAAGCGTACC
TCATTCGTAG GCCGTATTGA AGTATCGGCG CGCCATGCCT TTGTGGTGCC CGACGGCCGC
AAGATGCACG TAGATATTTT TATTCCGAAA GAACACATCA ACGGAGCCAA AACCGGCGAA
AAAGTTTTGG TGGATATTAC TGCCTGGCCG ACACGCGATG AAAAAAGCCC TACGGGAAAA
GTTACCGAAG TGCTTGGTAT GGCAGGTGAA AACGAAACGG AGATGCACGC CATCTTAGCA
GAATTCGGTT TGCCGTATGA ATTCCCGAAT CAGGTTATTA AAGCTGCGCA GGACATAACA
GCTGAAACAT CAGAAGCTGA AATCAAGAAA CGCCGTGACA TGCGTGGAAC TACAACATTC
ACCATTGACC CGGAAGATGC CAAAGATTTT GATGATGCCA TTTCATTCAA ATATCTTGAC
AATGGCAATT GGGAAATAGG TGTACACATT GCCGATGTAT CACATTATGT ACAGCCTGGC
GATACGCTCG ATAAAGAAGC ATATCGACGA GCCACCTCTG TATACCTGGT AGACCGTTGC
GTACCTATGT TACCGGAGCG GCTCTCAAAT GAATTGTGTT CATTAAGACC CAACGAAGAT
AAATTAACCT TCTCTGCTAT CTTTGAAATT GATGCCGATG CAAAAGTGCT GGACGAATGG
TTCGGAAGAA CCATCATTCA CTCTACCCGT CGTTTCAGCT ATGAGCAGGC GCAGGAAGTA
ATCGAAACAC AGCAGGGAGA TCTGGTAAAA GAATTAACCA TACTGAATAC ACTTGCAAAG
AAGATGCGTG CACAACGCTT TAAAGAAGGC GCTATCAGCT TTGAAACCGT TGAAGTAAAA
TTCCAGCTGG ATGCAAAAGG CAAACCGCTG GCCGTTGTTC CTAAAGTGCG TAAAGATGCT
CATAAACTGA TTGAAGAATT TATGCTGCTT GCCAATAAGC GTGTAGCCGA GTTTGTATTC
AATCTGCGCA AAGGCAAAGG CACATCCAAT ACCATGGTGT ATCGTACGCA CGATGCGCCA
AACCCTGAAA AGCTGGCTTC GCTTGCAACC TTTGCAAAAC GTTTCGGACA CAAAGTTGAG
CTGGACGATG AAAATGCGAT TGCAAAAAAC CTCAATAAAT TAAGCGATGA AGTTGAAGGT
AAGCCGGAAC AGAACGTTTT GCAGAGTTTA GCGATCCGGA CCATGTCTAA AGCCATCTAC
AGCATTGAGC CGGATATGCA CTTTGGTCTG GCATTCAAAC ATTACTCCCA TTTTACCTCT
CCGATCCGCC GTTACCCGGA TGTGATGGCG CACCGTTTAC TGCAGCATTA TCTGGATGGC
GGTAAATCTG CCGATAAAGA GTATTACATT GAAGCTTGTG AGCATTCTTC GGCACAGGAA
AAACTGGCGG CAGAAGCAGA GCGCAGCTCG ATCAAATTCA AACAGGTTGA ATTTATGCAA
AGCAGTATCG GAAAAGAGTT TGAAGGTATT GTGTCTGGTG TAACAGAGTT TGGTATGTTT
GTAGAAATTG TTGAAACCAA ATGCGAAGGT ATGGTACGCC TGGCAGACAT GGATGATGAT
TTCTATGAAG TTGACACCGA CAACTACCGG ATCGTTGGTA AAAGAAATAA ACGGATGATC
ACCTTGGGTG ATTCTGTTCA GGTAATTGTT AAATCTACCA ACCTTGAGCG CAGAACAATT
GATCTGGAAT TAGTAAAAAA CAGTGATGGA AATAGAGACG TAAACAGAGA CGCCCTGGAT
TTCAGCGATG CACGTAAACC ATCAAAACGA TAA
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| Protein sequence | MRKKTTTTEQ SDTKGGESLR SKTTKFFNNS RKNPFSYKEL IKKLHLVRDK DKKALKDVLE
DLVREGILAK DKSGLYSNAG SSGGESLVTG RVDFVNARFA YVIPEGEKAD NDIWISSNKM
SGALDGDIVR VAVYKKSGGG NKGTKSAEGE IVEIVERKRT SFVGRIEVSA RHAFVVPDGR
KMHVDIFIPK EHINGAKTGE KVLVDITAWP TRDEKSPTGK VTEVLGMAGE NETEMHAILA
EFGLPYEFPN QVIKAAQDIT AETSEAEIKK RRDMRGTTTF TIDPEDAKDF DDAISFKYLD
NGNWEIGVHI ADVSHYVQPG DTLDKEAYRR ATSVYLVDRC VPMLPERLSN ELCSLRPNED
KLTFSAIFEI DADAKVLDEW FGRTIIHSTR RFSYEQAQEV IETQQGDLVK ELTILNTLAK
KMRAQRFKEG AISFETVEVK FQLDAKGKPL AVVPKVRKDA HKLIEEFMLL ANKRVAEFVF
NLRKGKGTSN TMVYRTHDAP NPEKLASLAT FAKRFGHKVE LDDENAIAKN LNKLSDEVEG
KPEQNVLQSL AIRTMSKAIY SIEPDMHFGL AFKHYSHFTS PIRRYPDVMA HRLLQHYLDG
GKSADKEYYI EACEHSSAQE KLAAEAERSS IKFKQVEFMQ SSIGKEFEGI VSGVTEFGMF
VEIVETKCEG MVRLADMDDD FYEVDTDNYR IVGKRNKRMI TLGDSVQVIV KSTNLERRTI
DLELVKNSDG NRDVNRDALD FSDARKPSKR
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