Gene CHU_0366 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_0366 
SymbolpdhR 
ID4186058 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand+ 
Start bp438669 
End bp439337 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content41% 
IMG OID638070374 
ProductGntR family transcriptional regulator 
Protein accessionYP_676996 
Protein GI110636789 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.479858 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTATT ATTCCGAAAA AATAGAAGTG GTAAAATTAG CAGATCAGGT AGCTGCTAAA 
TTACAGCAGC TTATTGGTTC GGGTGAATAT AAAAAAGGGG ATAAGATTCC TACTGAGCCC 
GAACTAATGG CCCGATTTGG TGTGGGCCGT TCAACAGTAC GGGAGTCTGT ACGTATACTG 
GCGAATGCCG GTCTGCTATC AGTTTTACAA GGCAAAGGAA CTTTTGTACA GGACACTACT 
GTTGTAGCCG AACCTTTGCA CCAGCGCCTC CGCAGGGCCA ATAATAAAGA GCTGAATGAG 
GTACGTCACA TGCTTGAGAT AACCATGGTT CAAAAAGCTG CTGAAAACAG GACTGAAAAA 
GAAGTGAAAC AAATGCGGAC ATTGCTGAAT CAGCGAAGGA GAGCAATTGA AGAACAGTTG 
CAGGATGAAT GCCTCAATGC CGATATCGCC TTTCATGTAG TGATAGCGGA AGCGTCAAAA 
AATCAGGTAT TGATTGACTT ATACAAAACG TTTTCAAAAG TGATCAGTGA GTATTTTCAA 
ACCGAATATC CCGACACAAA AGCGTATAAA CGTTCACAGG CTCTTCACGA AAAATTATGT 
GATGCAATTG CAACCAAAGA ATCTAAAAAA GCAGCTGAAT ACATGTCTCA GATATTAAGT 
CTGGATTAA
 
Protein sequence
MNYYSEKIEV VKLADQVAAK LQQLIGSGEY KKGDKIPTEP ELMARFGVGR STVRESVRIL 
ANAGLLSVLQ GKGTFVQDTT VVAEPLHQRL RRANNKELNE VRHMLEITMV QKAAENRTEK 
EVKQMRTLLN QRRRAIEEQL QDECLNADIA FHVVIAEASK NQVLIDLYKT FSKVISEYFQ 
TEYPDTKAYK RSQALHEKLC DAIATKESKK AAEYMSQILS LD