| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0277 |
|---|
| Symbol | |
|---|
| ID | 4185753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 332969 |
|---|
| End bp | 336859 |
|---|
| Gene Length | 3891 bp |
|---|
| Protein Length | 1296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638070286 |
|---|
| Product | superfamily I DNA helicase |
|---|
| Protein accession | YP_676908 |
|---|
| Protein GI | 110636701 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGTTTAT CTGCTGCTCA GGAATTAGAC GTAAGTGCAT TACATTTTAT TGACAAACAT
GCCGCTTTTC ACACCATTGA AGAATTATTA ACTGAGAAAA AAAGTATACG CATCAGTTCC
GTGCAGGAAC CTCGGGTTGA ACAGGTTCAG CTTGTATCTT CCTCGTTAAA AAAAATATAC
CGTAAGCTTG CGCAGATCTA TGAAGAACGT GGTTTGTATG AATGTTATGT AGGCTGGCTA
TTTGCCGAAG GTAAGTGGAA AGATGGAACA CCCTTCCGTG CGCCGCTTTT ATTTTTCCCG
GTAAAATTAG AAATGGAAGG TAATGGCTGG TTTCTTCGCA GAGAAGAGGG CCGTACCATA
CAACTGAATA AAAGTTTGCT GTTAGCCTTT GCGCACTACC ACGATCTTGT ATTGCCTGAT
GAAGTACTGG AAGAAAATTT TGAAGATTTT TCTTCCGATC CGCTGGAATT CCGCACACAA
ATTTATGAAT GGTTAAAGAA AACCAAACTT GAATTTCTGT TCAGCAACGA ATATTTTTTA
AACAACATTC AGCCATTAAA AACATATAAA CGCCAGGAGT ATCAAGACCG TTATCACCTT
GGTGAAATGC GCATTCACCC AAATGCCGTA TTAGGAATAT TCCCGCAGGC AGGCTCTGCT
ATTGCAGCCG ATTTTGATGC ATGGGCTGAA AATCTTTCGG ATACCTCGCT GGAAAATTTC
TTTGCAGACC GCAACCGTAT TAAACTGCCG AATGACCCAT ACAAAGAAGA CCTGATGACA
CCTTACAGCA TGGACGCTTC GCAGGAGTTT GCCATACGTG AAGTACAAAT GGGGAAATCC
ATTGTGATAC AGGGCCCGCC CGGTTCAGGA AAATCTGAAA CTATTTGTAA CATGATCTGT
TCTGCTGTAG CGGCAGGCAA AAAAATATTA GTTATTTCGC ACAAACGTGC AGCCCTTGAA
GTAGTCGCGA AACGTCTGGG GCAAAAATCA CTGGATGATT TTTTTGCACT CGTGCACGAT
GTAAAATTTG ATCAACGCAG TTTATATACA AAAATTGAAA AGCAAATTGA ACATATTGAA
TCGTATCAAA CCATTAACAA TGGATTGGAT GCGATTTATA TGGAAAGGGA GTTTGCAGCT
TCTGTAAAAT TATTGACACA ACTGAATACA CACAGCGAAG AATTCAGGAA TGCCTTATTT
GATACACGCA TTTGCGGTTT CAGTGCACAT GAACTGTATC TGAAAGCCAG TACGGAAGAA
GGAACGATCA ACCTGAGCGA TCTGTATACA TGTTATCCGG CTAAAGAGCT CGAGCGGCTC
ATTCATGCAG TGCAGACGTA CAGTATTTAT GCAGCCATTC CTTACCCGCA TGCAGAACTC
TGGAAAAACA GAATAGAGCA GCCTGATATG ACTTCACAAA CGTTTGAATT GTGGCAATCA
AAAGCCTCTG TTCTTAAACA GGCAATCGAT GATTTTAAGC AACAGCTTGC TGTGTATAAA
GAAACACGTA TTGCAACTGC TTTTGAATAC ATTGCTTCAT TAAAAATTAC GCTTGAATCC
GTTCACGCAT TACTGCAAGA AGATTCAACT AAAAAATTAT GGAACGCATT TTTCCGGCCG
GTTGATTTTG CTAAAGCGTC TCAGCTAATA GAATCTATTG CTGTTATTCA AAAAGAAAAT
CAGTCGCTGT TTTCAAACTA CAGTCTGAGT GAATTGCATG CACTGCAAGC ATTGCTTTCG
AATGCACATA AAAAATCTGA AGGTACATTT GGATGGCTTT TATATGCTGT TTTTTCTCCG
GAATATAAAA TTTTAAAAAA AGCAGCTGAA TACACAAATA CTGCCCTATC TGCACAAACA
CTGCAGGCAT TAACAGACAA AATCAAATCA GCCCTTCTTG TTGAAGCGCT TCTAAAAGAA
ACGGCAGCGC TTACCGATCT TACCATTCCG TTACAAGACA CCGATGCACT TCAGGCGTTG
ACTAACGTGA TACAAACGTT CTATAAGCTG CTGCAGCCGA TTGAAGAAAC AAACCCGTCT
CTGTACCGTC ATGTCATTGC CCTGAATGCA GCGGCTGCAG AACAATTGAT TAAACATATA
CTTCATGCAC ATACAACATT AACAGCAGCG GCGGCAAATA CGTCTGCTTA TTTCAGTACG
CCACAGCAAT TGTATTTTAT TAAAGACGTA GACTTGCTGG ATGAATGGAT GCAATTTACA
GGTGAACATC TCAACGACGT TCAACATCTT GATGCCTTAC TGCATTCATT GAATGCAACC
GACCGCATCT GCATCCAACG CTTAGCAGTG CTTTCCGATG CTTATCCCGC AAACAAATGG
GCAGTACTTA TTGAACAGTC TGTTTTAAAA CACTGGATCC AGCACATTGA ACTTGTCTAT
CCGATTCTTA AAAGTCTGGA TACATTACGC TGGAAACAGT TTGCACAAGA CTGGACCATT
CATTCAGAAA AACGTAAAGC ACTTTCGCTG GAAATGATCT TAGGCAAACT GCGTGAACAA
ACGTATCGGG AAATTGTTTT TAACAGATTA CAAAATAGAA TTACGTATCG GGATCTGCAG
CATCAGGTAA CGAAGAAAAA ACGCGTATGG CCGATGCGGA AGCTGATGCA TGAATATGCG
CAGGAAGTTT TTTCTCTTAT CCCCTGCTGG ATGATGTCGC CCGAACAGGT TTCATGCGTG
TTTCCGCTTG AACAATTGTT TGACCTGATC ATTATTGATG AGGCTTCTCA ATGTTATACC
GAACATAGTT TACCTGCTAT GTACCGTGCC AAGCAAATTG TGATTGCCGG AGACTCGCAG
CAATTACCGC CGAGTGACCT GTATCGGGTA CGCTGGGATG ATGATGAAGA AAACGAACCC
GACATTGAAA TAGATTCATT GCTTGATCTG GGTGAGCGTT ATTTGTCGAG TGTTTTATTG
AAGGGGCATT ACCGCAGCCG CTATCCGGAA CTGATTGCGT TTTCAAACCA ACAGTTCTAC
GGCAACAAAT TAAATTATGT ACCCAGATAC GAAGACATCC ATGCTGCTGT AAAACCCATT
ACATACCGCA AAGTGAATGG TGTATGGGCA AACAGCATCA ATAAAAACGA AGCAGAAGAA
GTTGTGCGCA TAACACTGGA TTACATTCAG GCAGGGAAAC ATTCTATTGG CATTGTTTGT
TTCAATTATC AGCAGGCTTC TTACATTCAG GATCTATTAG AACAGGAGTC GGTAAAGAAA
CAGTTTTTGC TTCCTGAAGA ACTTTTTATA AAAAATATTG AAAACGTTCA GGGAGATGAA
CGCGATATTA TTATTTTCTC TATTGGTTAT GCACCGGATA AAAACGGGAA ATTCTCCATG
CTCTTCGGAA GCTTAAATAT GCAGGGAGGA GAAAAGCGTA TGAATGTAGC TGTATCGCGT
GCGCGCGAAT CGGTTGTACT TGTTTGCAGT ATTATGCCGC AAGAACTACG CACCGAGACA
TTAAAGCACG AAGGGCCGCG TATCTTAAAA GAATACTTAC AATATGCATG GGATTGTCAG
CAGTTTGACC GCAATGCTTT TTTTGAAAAA CATGCGCATA CGGTTTCACT TGCTTCTACA
GCGGGCCGTA TTATGCAGGT GTGCAACGCA CATTCACCTA TGCAGGTAAA TCCTGTCTAT
CCATTTGCAA CGCTAACCGT AACAAAACAG CAAGCTGAAC TGTTGATTGA CACAGACGAC
ATTATTTACA AAAACACTGA GTATGCCAAA TACTGGCACT TCAACAAACC GTATGTATTT
ACACAAAAAG GATGGCCGTA CACACAGATC CTTTCAAAAA ATATCTATAC AAAATCGGAA
ACCGAACTTC TGGATCAGAT AAACACATCC GGAAATTCAA AACTTTCTTG A
|
|---|
| Protein sequence | MSLSAAQELD VSALHFIDKH AAFHTIEELL TEKKSIRISS VQEPRVEQVQ LVSSSLKKIY
RKLAQIYEER GLYECYVGWL FAEGKWKDGT PFRAPLLFFP VKLEMEGNGW FLRREEGRTI
QLNKSLLLAF AHYHDLVLPD EVLEENFEDF SSDPLEFRTQ IYEWLKKTKL EFLFSNEYFL
NNIQPLKTYK RQEYQDRYHL GEMRIHPNAV LGIFPQAGSA IAADFDAWAE NLSDTSLENF
FADRNRIKLP NDPYKEDLMT PYSMDASQEF AIREVQMGKS IVIQGPPGSG KSETICNMIC
SAVAAGKKIL VISHKRAALE VVAKRLGQKS LDDFFALVHD VKFDQRSLYT KIEKQIEHIE
SYQTINNGLD AIYMEREFAA SVKLLTQLNT HSEEFRNALF DTRICGFSAH ELYLKASTEE
GTINLSDLYT CYPAKELERL IHAVQTYSIY AAIPYPHAEL WKNRIEQPDM TSQTFELWQS
KASVLKQAID DFKQQLAVYK ETRIATAFEY IASLKITLES VHALLQEDST KKLWNAFFRP
VDFAKASQLI ESIAVIQKEN QSLFSNYSLS ELHALQALLS NAHKKSEGTF GWLLYAVFSP
EYKILKKAAE YTNTALSAQT LQALTDKIKS ALLVEALLKE TAALTDLTIP LQDTDALQAL
TNVIQTFYKL LQPIEETNPS LYRHVIALNA AAAEQLIKHI LHAHTTLTAA AANTSAYFST
PQQLYFIKDV DLLDEWMQFT GEHLNDVQHL DALLHSLNAT DRICIQRLAV LSDAYPANKW
AVLIEQSVLK HWIQHIELVY PILKSLDTLR WKQFAQDWTI HSEKRKALSL EMILGKLREQ
TYREIVFNRL QNRITYRDLQ HQVTKKKRVW PMRKLMHEYA QEVFSLIPCW MMSPEQVSCV
FPLEQLFDLI IIDEASQCYT EHSLPAMYRA KQIVIAGDSQ QLPPSDLYRV RWDDDEENEP
DIEIDSLLDL GERYLSSVLL KGHYRSRYPE LIAFSNQQFY GNKLNYVPRY EDIHAAVKPI
TYRKVNGVWA NSINKNEAEE VVRITLDYIQ AGKHSIGIVC FNYQQASYIQ DLLEQESVKK
QFLLPEELFI KNIENVQGDE RDIIIFSIGY APDKNGKFSM LFGSLNMQGG EKRMNVAVSR
ARESVVLVCS IMPQELRTET LKHEGPRILK EYLQYAWDCQ QFDRNAFFEK HAHTVSLAST
AGRIMQVCNA HSPMQVNPVY PFATLTVTKQ QAELLIDTDD IIYKNTEYAK YWHFNKPYVF
TQKGWPYTQI LSKNIYTKSE TELLDQINTS GNSKLS
|
|---|
| |